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    SMC4 structural maintenance of chromosomes 4 [ Canis lupus familiaris (dog) ]

    Gene ID: 478679, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SMC4provided by VGNC
    Official Full Name
    structural maintenance of chromosomes 4provided by VGNC
    Primary source
    VGNC:VGNC:46545
    See related
    Ensembl:ENSCAFG00845027487
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 34
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 34 NC_051838.1 (26512289..26551391)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 34 NC_006616.4 (30497727..30536870)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 34 NC_049255.1 (26642712..26681816)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 34 NC_049294.1 (26441927..26481068)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 34 NC_049775.1 (26402626..26441727)

    Chromosome 34 - NC_051838.1Genomic Context describing neighboring genes Neighboring gene chromosome 34 C3orf80 homolog Neighboring gene intraflagellar transport 80 Neighboring gene 28S ribosomal protein S36, mitochondrial-like Neighboring gene microRNA mir-16-2 Neighboring gene microRNA mir-15b Neighboring gene uncharacterized LOC106558222 Neighboring gene tripartite motif containing 59 Neighboring gene uncharacterized LOC119867514

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    structural maintenance of chromosomes protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051838.1 Reference ROS_Cfam_1.0

      Range
      26512289..26551391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038445926.1 → XP_038301854.1  structural maintenance of chromosomes protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0NGA8, A0A8C0TEW8, A0A8I3Q087, A0A8I3Q1Z2
      Related
      ENSCAFP00845038034.1, ENSCAFT00845048482.1
      Conserved Domains (2) summary
      PHA03247
      Location:2 → 59
      PHA03247; large tegument protein UL36; Provisional
      pfam02463
      Location:83 → 1274
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_038445927.1 → XP_038301855.1  structural maintenance of chromosomes protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0TEW8, A0A8I3Q087
      Conserved Domains (1) summary
      pfam02463
      Location:11 → 1202
      SMC_N; RecF/RecN/SMC N terminal domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049294.1 Alternate UMICH_Zoey_3.1

      Range
      26441927..26481068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038520122.1 → XP_038376050.1  structural maintenance of chromosomes protein 4 isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:2 → 59
      PHA03247; large tegument protein UL36; Provisional
      pfam02463
      Location:83 → 1274
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_038520123.1 → XP_038376051.1  structural maintenance of chromosomes protein 4 isoform X2

      Conserved Domains (1) summary
      pfam02463
      Location:11 → 1202
      SMC_N; RecF/RecN/SMC N terminal domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049775.1 Alternate UNSW_CanFamBas_1.0

      Range
      26402626..26441727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038648165.1 → XP_038504093.1  structural maintenance of chromosomes protein 4 isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:2 → 59
      PHA03247; large tegument protein UL36; Provisional
      pfam02463
      Location:83 → 1274
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_038648166.1 → XP_038504094.1  structural maintenance of chromosomes protein 4 isoform X2

      Conserved Domains (1) summary
      pfam02463
      Location:11 → 1202
      SMC_N; RecF/RecN/SMC N terminal domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049255.1 Alternate UU_Cfam_GSD_1.0

      Range
      26642712..26681816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038583752.1 → XP_038439680.1  structural maintenance of chromosomes protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0NGA8, A0A8C0TEW8, A0A8I3Q087, A0A8I3Q1Z2
      Conserved Domains (2) summary
      PHA03247
      Location:2 → 59
      PHA03247; large tegument protein UL36; Provisional
      pfam02463
      Location:83 → 1274
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_038583753.1 → XP_038439681.1  structural maintenance of chromosomes protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0TEW8, A0A8I3Q087
      Conserved Domains (1) summary
      pfam02463
      Location:11 → 1202
      SMC_N; RecF/RecN/SMC N terminal domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006616.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      30497727..30536870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_535848.7 → XP_535848.2  structural maintenance of chromosomes protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0NGA8, A0A8C0TEW8, A0A8I3Q087, A0A8I3Q1Z2
      Conserved Domains (2) summary
      PHA03247
      Location:2 → 59
      PHA03247; large tegument protein UL36; Provisional
      pfam02463
      Location:83 → 1274
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_038462933.1 → XP_038318861.1  structural maintenance of chromosomes protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0TEW8, A0A8I3Q087
      Conserved Domains (1) summary
      pfam02463
      Location:11 → 1202
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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