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    CCDC50 coiled-coil domain containing 50 [ Canis lupus familiaris (dog) ]

    Gene ID: 478675, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CCDC50provided by VGNC
    Official Full Name
    coiled-coil domain containing 50provided by VGNC
    Primary source
    VGNC:VGNC:38840
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 34
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 34 NC_051838.1 (23119939..23177337)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 34 NC_006616.4 (27277632..27334934)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 34 NC_049255.1 (23369224..23426549)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 34 NC_049294.1 (23139896..23197198)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 34 NC_049775.1 (23126868..23184645)

    Chromosome 34 - NC_051838.1Genomic Context describing neighboring genes Neighboring gene osteocrin Neighboring gene urotensin 2B Neighboring gene uncharacterized LOC119867448 Neighboring gene uncharacterized LOC111093834 Neighboring gene fibroblast growth factor 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 50

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051838.1 Reference ROS_Cfam_1.0

      Range
      23119939..23177337
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038445874.1 → XP_038301802.1  coiled-coil domain-containing protein 50 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R4H6
      Conserved Domains (1) summary
      pfam15295
      Location:9 → 120
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    2. XM_038445873.1 → XP_038301801.1  coiled-coil domain-containing protein 50 isoform X1

      UniProtKB/TrEMBL
      A0A8C0R4H6
      Conserved Domains (1) summary
      pfam15295
      Location:25 → 136
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    3. XM_038445875.1 → XP_038301803.1  coiled-coil domain-containing protein 50 isoform X3

      Conserved Domains (1) summary
      pfam15295
      Location:25 → 136
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049294.1 Alternate UMICH_Zoey_3.1

      Range
      23139896..23197198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038520073.1 → XP_038376001.1  coiled-coil domain-containing protein 50 isoform X2

      Conserved Domains (1) summary
      pfam15295
      Location:9 → 120
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    2. XM_038520072.1 → XP_038376000.1  coiled-coil domain-containing protein 50 isoform X1

      Conserved Domains (1) summary
      pfam15295
      Location:25 → 136
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    3. XM_038520074.1 → XP_038376002.1  coiled-coil domain-containing protein 50 isoform X3

      Conserved Domains (1) summary
      pfam15295
      Location:25 → 136
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049775.1 Alternate UNSW_CanFamBas_1.0

      Range
      23126868..23184645
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038648114.1 → XP_038504042.1  coiled-coil domain-containing protein 50 isoform X2

    2. XM_038648113.1 → XP_038504041.1  coiled-coil domain-containing protein 50 isoform X1

    3. XM_038648115.1 → XP_038504043.1  coiled-coil domain-containing protein 50 isoform X3

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049255.1 Alternate UU_Cfam_GSD_1.0

      Range
      23369224..23426549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038583698.1 → XP_038439626.1  coiled-coil domain-containing protein 50 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R4H6
      Conserved Domains (1) summary
      pfam15295
      Location:9 → 120
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    2. XM_038583697.1 → XP_038439625.1  coiled-coil domain-containing protein 50 isoform X1

      UniProtKB/TrEMBL
      A0A8C0R4H6
      Conserved Domains (1) summary
      pfam15295
      Location:25 → 136
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    3. XM_038583699.1 → XP_038439627.1  coiled-coil domain-containing protein 50 isoform X3

      Conserved Domains (1) summary
      pfam15295
      Location:25 → 136
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006616.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      27277632..27334934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022414349.2 → XP_022270057.1  coiled-coil domain-containing protein 50 isoform X2

      UniProtKB/TrEMBL
      A0A8C0R4H6
      Conserved Domains (1) summary
      pfam15295
      Location:9 → 120
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    2. XM_038462681.1 → XP_038318609.1  coiled-coil domain-containing protein 50 isoform X1

      UniProtKB/TrEMBL
      A0A8C0R4H6
      Conserved Domains (1) summary
      pfam15295
      Location:25 → 136
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus

    3. XM_038462682.1 → XP_038318610.1  coiled-coil domain-containing protein 50 isoform X3

      Conserved Domains (1) summary
      pfam15295
      Location:25 → 136
      CCDC50_N; Coiled-coil domain-containing protein 50 N-terminus
    Nucleotide Protein
    Heading Accession and Version

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