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    PSMD1 proteasome 26S subunit, non-ATPase 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 470674, updated on 29-Mar-2024

    Summary

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    Official Symbol
    PSMD1provided by VGNC
    Official Full Name
    proteasome 26S subunit, non-ATPase 1provided by VGNC
    Primary source
    VGNC:VGNC:2793
    Locus tag
    CK820_G0010877
    See related
    Ensembl:ENSPTRG00000013021
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2B
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (133305725..133421206)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (133216890..133332366)

    Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107973953 Neighboring gene chromosome 13 C2orf72 homolog Neighboring gene 5-hydroxytryptamine receptor 2B Neighboring gene armadillo repeat containing 9 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables enzyme regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in proteasome storage granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 1
    Names
    proteasome (prosome, macropain) 26S subunit, non-ATPase, 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001246549.1 → NP_001233478.1  26S proteasome non-ATPase regulatory subunit 1

      See identical proteins and their annotated locations for NP_001233478.1

      Status: PROVISIONAL

      Source sequence(s)
      AK306965
      UniProtKB/TrEMBL
      A0A2J8NF60, A0A6D2VSL7, G2HJQ1
      Related
      ENSPTRP00000022265.4, ENSPTRT00000024140.5
      Conserved Domains (2) summary
      COG5116
      Location:2 → 934
      RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      sd00044
      Location:601 → 624
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      133305725..133421206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009444437.5 → XP_009442712.1  26S proteasome non-ATPase regulatory subunit 1 isoform X1

      See identical proteins and their annotated locations for XP_009442712.1

      UniProtKB/TrEMBL
      K7BW74
      Conserved Domains (3) summary
      COG5116
      Location:2 → 940
      RPN2; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
      pfam01851
      Location:657 → 691
      PC_rep; Proteasome/cyclosome repeat
      sd00044
      Location:607 → 630
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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