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    ZGPAT zinc finger CCCH-type and G-patch domain containing [ Pan troglodytes (chimpanzee) ]

    Gene ID: 470003, updated on 29-Mar-2024

    Summary

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    Official Symbol
    ZGPATprovided by VGNC
    Official Full Name
    zinc finger CCCH-type and G-patch domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:10068
    See related
    Ensembl:ENSPTRG00000013750
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 20
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (70047672..70076617)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (70103152..70132098)

    Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene stathmin 3 Neighboring gene uncharacterized LOC107972506 Neighboring gene regulator of telomere elongation helicase 1 Neighboring gene ADP ribosylation factor related protein 1 Neighboring gene SLC2A4 regulator Neighboring gene Lck interacting transmembrane adaptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH-type with G patch domain-containing protein
    Names
    zinc finger, CCCH-type with G patch domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      70047672..70076617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_525387.8 → XP_525387.3  zinc finger CCCH-type with G patch domain-containing protein isoform X4

      See identical proteins and their annotated locations for XP_525387.3

      UniProtKB/TrEMBL
      K7A1Z7
      Conserved Domains (3) summary
      cd04508
      Location:221 → 251
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:178 → 199
      ZnF_C3H1; zinc finger
      pfam01585
      Location:313 → 354
      G-patch; G-patch domain

    2. XM_009437648.4 → XP_009435923.1  zinc finger CCCH-type with G patch domain-containing protein isoform X1

      See identical proteins and their annotated locations for XP_009435923.1

      UniProtKB/TrEMBL
      K7AJ69
      Related
      ENSPTRP00000093520.1
      Conserved Domains (3) summary
      cd04508
      Location:221 → 251
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:178 → 199
      ZnF_C3H1; zinc finger
      pfam01585
      Location:333 → 374
      G-patch; G-patch domain

    3. XM_054674502.2 → XP_054530477.1  zinc finger CCCH-type with G patch domain-containing protein isoform X5

      UniProtKB/TrEMBL
      H2QKT3, K7CEC1

    4. XM_003317054.5 → XP_003317102.1  zinc finger CCCH-type with G patch domain-containing protein isoform X4

      See identical proteins and their annotated locations for XP_003317102.1

      UniProtKB/TrEMBL
      K7A1Z7
      Conserved Domains (3) summary
      cd04508
      Location:221 → 251
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:178 → 199
      ZnF_C3H1; zinc finger
      pfam01585
      Location:313 → 354
      G-patch; G-patch domain

    5. XM_003317055.5 → XP_003317103.1  zinc finger CCCH-type with G patch domain-containing protein isoform X4

      See identical proteins and their annotated locations for XP_003317103.1

      UniProtKB/TrEMBL
      K7A1Z7
      Conserved Domains (3) summary
      cd04508
      Location:221 → 251
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:178 → 199
      ZnF_C3H1; zinc finger
      pfam01585
      Location:313 → 354
      G-patch; G-patch domain

    6. XM_009437644.3 → XP_009435919.1  zinc finger CCCH-type with G patch domain-containing protein isoform X2

      Conserved Domains (3) summary
      cd04508
      Location:221 → 251
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:178 → 199
      ZnF_C3H1; zinc finger
      pfam01585
      Location:325 → 366
      G-patch; G-patch domain

    7. XM_009437642.3 → XP_009435917.1  zinc finger CCCH-type with G patch domain-containing protein isoform X1

      See identical proteins and their annotated locations for XP_009435917.1

      UniProtKB/TrEMBL
      K7AJ69
      Conserved Domains (3) summary
      cd04508
      Location:221 → 251
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:178 → 199
      ZnF_C3H1; zinc finger
      pfam01585
      Location:333 → 374
      G-patch; G-patch domain

    8. XM_063802754.1 → XP_063658824.1  zinc finger CCCH-type with G patch domain-containing protein isoform X3

    9. XM_009437646.3 → XP_009435921.1  zinc finger CCCH-type with G patch domain-containing protein isoform X5

      See identical proteins and their annotated locations for XP_009435921.1

      UniProtKB/TrEMBL
      H2QKT3, K7CEC1
      Related
      ENSPTRP00000023690.5
      Conserved Domains (3) summary
      cd04508
      Location:221 → 251
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:178 → 199
      ZnF_C3H1; zinc finger
      pfam01585
      Location:304 → 345
      G-patch; G-patch domain

    10. XM_054674501.2 → XP_054530476.1  zinc finger CCCH-type with G patch domain-containing protein isoform X5

      UniProtKB/TrEMBL
      H2QKT3, K7CEC1

    11. XM_054674500.2 → XP_054530475.1  zinc finger CCCH-type with G patch domain-containing protein isoform X2

    12. XM_009437643.3 → XP_009435918.1  zinc finger CCCH-type with G patch domain-containing protein isoform X1

      See identical proteins and their annotated locations for XP_009435918.1

      UniProtKB/TrEMBL
      K7AJ69
      Conserved Domains (3) summary
      cd04508
      Location:221 → 251
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:178 → 199
      ZnF_C3H1; zinc finger
      pfam01585
      Location:333 → 374
      G-patch; G-patch domain
    Nucleotide Protein
    Heading Accession and Version

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