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    CPSF4 cleavage and polyadenylation specific factor 4 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 463572, updated on 3-Apr-2024

    Summary

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    Official Symbol
    CPSF4provided by VGNC
    Official Full Name
    cleavage and polyadenylation specific factor 4provided by VGNC
    Primary source
    VGNC:VGNC:4320
    Locus tag
    CK820_G0047451
    See related
    Ensembl:ENSPTRG00000019453
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (108838912..108857274)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (105186403..105204772)

    Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex subunit 1B Neighboring gene PDGFA associated protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene BUD31 homolog Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene SAP domain-containing ribonucleoprotein-like Neighboring gene ATP synthase membrane subunit f Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 4
    Names
    cleavage and polyadenylation specific factor 4, 30kDa
    no arches

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      108838912..108857274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_519234.8 → XP_519234.3  cleavage and polyadenylation specificity factor subunit 4 isoform X1

      See identical proteins and their annotated locations for XP_519234.3

      UniProtKB/TrEMBL
      A0A2J8Q0C1, A0A6D2VS97, H2QV04
      Related
      ENSPTRP00000033281.5
      Conserved Domains (1) summary
      COG5084
      Location:25 → 211
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

    2. XM_001137776.7 → XP_001137776.2  cleavage and polyadenylation specificity factor subunit 4 isoform X2

      See identical proteins and their annotated locations for XP_001137776.2

      UniProtKB/TrEMBL
      A0A2I3T8R1, A0A2J8Q0A2, A0A2J8Q0B7, A0A6D2W1S6, A0A8I3B1X8, K7AZ66, K7DTE1
      Conserved Domains (2) summary
      COG5084
      Location:25 → 176
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      cl26688
      Location:201 → 233
      DWNN; DWNN domain

    3. XM_009453692.5 → XP_009451967.1  cleavage and polyadenylation specificity factor subunit 4 isoform X3

      See identical proteins and their annotated locations for XP_009451967.1

      UniProtKB/TrEMBL
      A0A2I3T8R1, A0A2J8Q0B7, A0A6D2W1S6
      Related
      ENSPTRP00000085617.1
      Conserved Domains (2) summary
      smart00356
      Location:63 → 88
      ZnF_C3H1; zinc finger
      COG5084
      Location:25 → 176
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

    4. XM_016957805.4 → XP_016813294.1  cleavage and polyadenylation specificity factor subunit 4 isoform X7

      UniProtKB/TrEMBL
      A0A2J8Q0B1
      Conserved Domains (1) summary
      COG5084
      Location:25 → 159
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

    5. XM_063814787.1 → XP_063670857.1  cleavage and polyadenylation specificity factor subunit 4 isoform X4

    6. XM_063814788.1 → XP_063670858.1  cleavage and polyadenylation specificity factor subunit 4 isoform X5

      UniProtKB/TrEMBL
      A0A2J8Q0C4

    7. XM_063814789.1 → XP_063670859.1  cleavage and polyadenylation specificity factor subunit 4 isoform X6

    Nucleotide Protein
    Heading Accession and Version

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