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    TRIM26 tripartite motif containing 26 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 462536, updated on 3-Apr-2024

    Summary

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    Official Symbol
    TRIM26provided by VGNC
    Official Full Name
    tripartite motif containing 26provided by VGNC
    Primary source
    VGNC:VGNC:12729
    Locus tag
    CK820_G0006736
    See related
    Ensembl:ENSPTRG00000024332
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (36097385..36126132, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (36097392..36125996, complement)

    Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA48 Neighboring gene tripartite motif containing 40 Neighboring gene tripartite motif containing 10 Neighboring gene tripartite motif containing 15 Neighboring gene polyadenylate-binding protein-interacting protein 1-like Neighboring gene uncharacterized LOC134810187 Neighboring gene patr class I histocompatibility antigen, CH28 alpha chain-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. Anzai T, et al. Proc Natl Acad Sci U S A, 2003 Jun 24. PMID 12799463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of viral entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 26
    Names
    zinc finger protein 173
    NP_001037841.1
    XP_009449080.1
    XP_009449081.1
    XP_009449082.1
    XP_009449085.1
    XP_016810122.1
    XP_054541424.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044376.1 → NP_001037841.1  tripartite motif-containing protein 26

      See identical proteins and their annotated locations for NP_001037841.1

      Status: PROVISIONAL

      Source sequence(s)
      AB210204
      UniProtKB/Swiss-Prot
      Q1XHU4, Q7YR34
      UniProtKB/TrEMBL
      A0A2J8NX43, A0A663D669, K7BAR0, K7DM14
      Conserved Domains (4) summary
      COG0419
      Location:145 → 304
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd15826
      Location:314 → 538
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      36097385..36126132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016954633.4 → XP_016810122.1  tripartite motif-containing protein 26 isoform X2

      UniProtKB/TrEMBL
      K7DM14
      Conserved Domains (3) summary
      cd15826
      Location:237 → 461
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins

    2. XM_009450806.5 → XP_009449081.1  tripartite motif-containing protein 26 isoform X1

      See identical proteins and their annotated locations for XP_009449081.1

      UniProtKB/Swiss-Prot
      Q1XHU4, Q7YR34
      UniProtKB/TrEMBL
      A0A2J8NX43, A0A663D669, K7BAR0, K7DM14
      Conserved Domains (4) summary
      COG0419
      Location:145 → 304
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd15826
      Location:314 → 538
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins

    3. XM_009450810.4 → XP_009449085.1  tripartite motif-containing protein 26 isoform X1

      See identical proteins and their annotated locations for XP_009449085.1

      UniProtKB/Swiss-Prot
      Q1XHU4, Q7YR34
      UniProtKB/TrEMBL
      A0A2J8NX43, A0A663D669, K7BAR0, K7DM14
      Conserved Domains (4) summary
      COG0419
      Location:145 → 304
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd15826
      Location:314 → 538
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins

    4. XM_009450805.4 → XP_009449080.1  tripartite motif-containing protein 26 isoform X1

      See identical proteins and their annotated locations for XP_009449080.1

      UniProtKB/Swiss-Prot
      Q1XHU4, Q7YR34
      UniProtKB/TrEMBL
      A0A2J8NX43, A0A663D669, K7BAR0, K7DM14
      Conserved Domains (4) summary
      COG0419
      Location:145 → 304
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd15826
      Location:314 → 538
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins

    5. XM_009450807.4 → XP_009449082.1  tripartite motif-containing protein 26 isoform X1

      See identical proteins and their annotated locations for XP_009449082.1

      UniProtKB/Swiss-Prot
      Q1XHU4, Q7YR34
      UniProtKB/TrEMBL
      A0A2J8NX43, A0A663D669, K7BAR0, K7DM14
      Related
      ENSPTRP00000039843.2
      Conserved Domains (4) summary
      COG0419
      Location:145 → 304
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd15826
      Location:314 → 538
      SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
      cd16598
      Location:13 → 57
      RING-HC_TRIM26_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 26 (TRIM26) and similar proteins
      cd19765
      Location:100 → 138
      Bbox2_TRIM10-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM10, TRIM15, TRIM26, TRIM31 and similar proteins

    6. XM_054685449.2 → XP_054541424.1  tripartite motif-containing protein 26 isoform X2

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7YR34.1 GenPept UniProtKB/Swiss-Prot:Q7YR34

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