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    CLGN calmegin [ Pan troglodytes (chimpanzee) ]

    Gene ID: 461501, updated on 3-Apr-2024

    Summary

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    Official Symbol
    CLGNprovided by VGNC
    Official Full Name
    calmeginprovided by VGNC
    Primary source
    VGNC:VGNC:58512
    Locus tag
    CK820_G0042131
    See related
    Ensembl:ENSPTRG00000049174
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See CLGN in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (141849284..141888283, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (141808997..141847644, complement)

    Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4-like Neighboring gene uncharacterized LOC107974419 Neighboring gene large ribosomal subunit protein eL14-like Neighboring gene short coiled-coil protein Neighboring gene MGAT4 family member D Neighboring gene ELMO domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmegin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001280383.1 → NP_001267312.1  calmegin precursor

      See identical proteins and their annotated locations for NP_001267312.1

      Status: PROVISIONAL

      Source sequence(s)
      AK305377
      UniProtKB/TrEMBL
      A0A2J8K2T1, A0A6D2XKX7, G2HF63, K7DR64
      Related
      ENSPTRP00000087305.1, ENSPTRT00000089344.1
      Conserved Domains (1) summary
      pfam00262
      Location:62 → 429
      Calreticulin; Calreticulin family

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      141849284..141888283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016950982.4 → XP_016806471.1  calmegin isoform X1

      UniProtKB/TrEMBL
      K7DR64

    2. XM_063808309.1 → XP_063664379.1  calmegin isoform X2

      UniProtKB/TrEMBL
      A0A2J8K2T1, A0A6D2XKX7, G2HF63
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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