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    SHISA5 shisa family member 5 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 460345, updated on 3-Apr-2024

    Summary

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    Official Symbol
    SHISA5provided by VGNC
    Official Full Name
    shisa family member 5provided by VGNC
    Primary source
    VGNC:VGNC:2563
    Locus tag
    CK820_G0005155
    See related
    Ensembl:ENSPTRG00000014888
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (52496936..52533641, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (52496605..52532782, complement)

    Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 51 Neighboring gene translation machinery associated 7 homolog Neighboring gene ATR interacting protein Neighboring gene three prime repair exonuclease 1 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 Neighboring gene urocortin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein shisa-5
    Names
    scotin
    shisa homolog 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001246427.1 → NP_001233356.1  protein shisa-5

      See identical proteins and their annotated locations for NP_001233356.1

      Status: PROVISIONAL

      Source sequence(s)
      AK305819
      UniProtKB/TrEMBL
      A0A2J8P9Z4, A0A6D2XR57, G2HGF5, K7AV59
      Related
      ENSPTRP00000067859.1, ENSPTRT00000085650.1
      Conserved Domains (1) summary
      pfam13908
      Location:3 → 158
      Shisa; Wnt and FGF inhibitory regulator

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      52496936..52533641 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063805111.1 → XP_063661181.1  protein shisa-5 isoform X1

      UniProtKB/TrEMBL
      A0A2J8P9Z4, A0A6D2XR57, G2HGF5

    2. XM_009445325.3 → XP_009443600.1  protein shisa-5 isoform X2

      See identical proteins and their annotated locations for XP_009443600.1

      UniProtKB/TrEMBL
      A0A2J8P9X1, A0A6D2W2J1, H2QMJ3, K7AV59
      Related
      ENSPTRP00000025686.2
      Conserved Domains (1) summary
      pfam13908
      Location:28 → 189
      Shisa; Wnt and FGF inhibitory regulator

    3. XM_063805108.1 → XP_063661178.1  protein shisa-5 isoform X1

      UniProtKB/TrEMBL
      A0A2J8P9Z4, A0A6D2XR57, G2HGF5

    4. XM_063805109.1 → XP_063661179.1  protein shisa-5 isoform X1

      UniProtKB/TrEMBL
      A0A2J8P9Z4, A0A6D2XR57, G2HGF5

    5. XM_063805110.1 → XP_063661180.1  protein shisa-5 isoform X1

      UniProtKB/TrEMBL
      A0A2J8P9Z4, A0A6D2XR57, G2HGF5

    6. XM_009445328.3 → XP_009443603.1  protein shisa-5 isoform X3

      See identical proteins and their annotated locations for XP_009443603.1

      UniProtKB/TrEMBL
      A0A2I3TDZ4, A0A2J8P9Z6, A0A6D2WFS6
      Related
      ENSPTRP00000087478.1
      Conserved Domains (1) summary
      pfam13908
      Location:2 → 86
      Shisa; Wnt and FGF inhibitory regulator
    Nucleotide Protein
    Heading Accession and Version

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