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    CHL1 cell adhesion molecule L1 like [ Pan troglodytes (chimpanzee) ]

    Gene ID: 460126, updated on 3-Apr-2024

    Summary

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    Official Symbol
    CHL1provided by VGNC
    Official Full Name
    cell adhesion molecule L1 likeprovided by VGNC
    Primary source
    VGNC:VGNC:7034
    Locus tag
    CK820_G0025124
    See related
    Ensembl:ENSPTRG00000014558
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (4246121..4452251)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (4245797..4451927)

    Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101057673 Neighboring gene uncharacterized LOC107970456 Neighboring gene U6 spliceosomal RNA Neighboring gene prothymosin alpha-like Neighboring gene uncharacterized LOC104005445

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neural cell adhesion molecule L1-like protein
    Names
    cell adhesion molecule with homology to L1CAM (close homolog of L1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      4246121..4452251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009444749.5 → XP_009443024.1  neural cell adhesion molecule L1-like protein isoform X1

      See identical proteins and their annotated locations for XP_009443024.1

      UniProtKB/TrEMBL
      A0A2I3SW43, A0A2J8M0I1, A0A6D2WKR7, H2QLY7
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 811
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    2. XM_001136954.5 → XP_001136954.1  neural cell adhesion molecule L1-like protein isoform X1

      See identical proteins and their annotated locations for XP_001136954.1

      UniProtKB/TrEMBL
      A0A2I3SW43, A0A2J8M0I1, A0A6D2WKR7, H2QLY7
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 811
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    3. XM_001136570.5 → XP_001136570.1  neural cell adhesion molecule L1-like protein isoform X2

      See identical proteins and their annotated locations for XP_001136570.1

      UniProtKB/TrEMBL
      A0A2I3SW43, A0A2I3T382, A0A2J8M0L4, A0A6D2XVF6
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:612 → 701
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:715 → 795
      fn3; Fibronectin type III domain
      pfam13882
      Location:1105 → 1190
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:441 → 508
      Ig; Immunoglobulin domain
      cd04978
      Location:345 → 419
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:258 → 328
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    4. XM_016940312.4 → XP_016795801.1  neural cell adhesion molecule L1-like protein isoform X3

      UniProtKB/TrEMBL
      A0A2I3SW43, A0A2I3TGN1, A0A2J8M0E4, A0A6D2W626
      Related
      ENSPTRP00000088397.1
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 811
      fn3; Fibronectin type III domain
      pfam13882
      Location:1067 → 1152
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    5. XM_063806583.1 → XP_063662653.1  neural cell adhesion molecule L1-like protein isoform X4

    6. XM_009444750.5 → XP_009443025.1  neural cell adhesion molecule L1-like protein isoform X1

      See identical proteins and their annotated locations for XP_009443025.1

      UniProtKB/TrEMBL
      A0A2I3SW43, A0A2J8M0I1, A0A6D2WKR7, H2QLY7
      Related
      ENSPTRP00000025098.1
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 811
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    7. XM_009444751.5 → XP_009443026.1  neural cell adhesion molecule L1-like protein isoform X1

      See identical proteins and their annotated locations for XP_009443026.1

      UniProtKB/TrEMBL
      A0A2I3SW43, A0A2J8M0I1, A0A6D2WKR7, H2QLY7
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 811
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    8. XM_054680361.2 → XP_054536336.1  neural cell adhesion molecule L1-like protein isoform X2

      UniProtKB/TrEMBL
      A0A2I3T382, A0A2J8M0L4, A0A6D2XVF6
    Nucleotide Protein
    Heading Accession and Version

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