U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    IFT172 intraflagellar transport 172 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 459104, updated on 29-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    IFT172provided by VGNC
    Official Full Name
    intraflagellar transport 172provided by VGNC
    Primary source
    VGNC:VGNC:272
    Locus tag
    CK820_G0042571
    See related
    Ensembl:ENSPTRG00000011771
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2A
    Exon count:
    50
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 12 NC_072410.2 (95365778..95410080)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2A NC_072399.1 (27443157..27487366, complement)

    Chromosome 12 - NC_072410.2Genomic Context describing neighboring genes Neighboring gene glucokinase regulator Neighboring gene fibronectin type III domain containing 4 Neighboring gene U6 spliceosomal RNA Neighboring gene keratinocyte associated protein 3 Neighboring gene nuclear receptor binding protein 1 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1G Neighboring gene ferritin heavy chain-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    intraflagellar transport protein 172 homolog
    Names
    intraflagellar transport 172 homolog
    selective LIM binding factor homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072410.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      95365778..95410080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003308933.6 → XP_003308981.2  intraflagellar transport protein 172 homolog isoform X3

      UniProtKB/TrEMBL
      A0A2I3S3C4, A0A2J8K0U2, A0A6D2XIP9, H2QHN3, K7B8Z3
      Related
      ENSPTRP00000020219.6
      Conserved Domains (4) summary
      cd15832
      Location:811 → 866
      SNAP; TPR repeat [structural motif]
      sd00039
      Location:20 → 64
      7WD40; WD40 repeat [structural motif]
      cl24038
      Location:808 → 994
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
      cl29593
      Location:17 → 318
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_016948252.3 → XP_016803741.1  intraflagellar transport protein 172 homolog isoform X2

      UniProtKB/TrEMBL
      A0A2I3S3C4
      Conserved Domains (4) summary
      cd15832
      Location:811 → 866
      SNAP; TPR repeat [structural motif]
      sd00039
      Location:20 → 64
      7WD40; WD40 repeat [structural motif]
      cl24038
      Location:808 → 994
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
      cl29593
      Location:17 → 318
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_063790010.1 → XP_063646080.1  intraflagellar transport protein 172 homolog isoform X1

    RNA

    1. XR_010149591.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous