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    CD48 CD48 molecule [ Pan troglodytes (chimpanzee) ]

    Gene ID: 457437, updated on 29-Mar-2024

    Summary

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    Official Symbol
    CD48provided by VGNC
    Official Full Name
    CD48 moleculeprovided by VGNC
    Primary source
    VGNC:VGNC:5013
    Locus tag
    CK820_G0049317
    See related
    Ensembl:ENSPTRG00000001557
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (88488108..88522079)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (142827653..142861063, complement)

    Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 9 Neighboring gene SLAM family member 7 Neighboring gene endogenous retrovirus group K member 18 Env polyprotein Neighboring gene protein SET-like Neighboring gene signaling lymphocytic activation molecule family member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables MHC class I protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in natural killer cell activation involved in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CD48 antigen
    Names
    CD48 antigen (B-cell membrane protein)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      88488108..88522079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001172145.4 → XP_001172145.2  CD48 antigen isoform X2

      UniProtKB/TrEMBL
      A0A2J8JAI7, A0A6D2WVH0, H2Q0E9
      Related
      ENSPTRP00000002613.1
      Conserved Domains (2) summary
      pfam13895
      Location:133 → 217
      Ig_2; Immunoglobulin domain
      cd05775
      Location:35 → 128
      Ig_CD2_like_N; N-terminal immunoglobulin (Ig)-like domain of T-cell surface antigen CD2 and similar domains

    2. XM_009435717.3 → XP_009433992.1  CD48 antigen isoform X1

      UniProtKB/TrEMBL
      A0A2I3SCH4, A0A2J8JAJ8, A0A6D2WTF8
      Related
      ENSPTRP00000074750.1
      Conserved Domains (2) summary
      pfam13895
      Location:133 → 217
      Ig_2; Immunoglobulin domain
      cd05775
      Location:35 → 128
      Ig_CD2_like_N; N-terminal immunoglobulin (Ig)-like domain of T-cell surface antigen CD2 and similar domains
    Nucleotide Protein
    Heading Accession and Version

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