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    TGIF1 TGFB induced factor homeobox 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 455312, updated on 3-Apr-2024

    Summary

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    Official Symbol
    TGIF1provided by VGNC
    Official Full Name
    TGFB induced factor homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:7335
    Locus tag
    CK820_G0018478
    See related
    Ensembl:ENSPTRG00000009838
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    TGIF
    Orthologs
    human mouse all
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    Genomic context

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    See TGIF1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 17 NC_072415.2 (27430044..27440784, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 18 NC_072416.1 (26352667..26363469, complement)

    Chromosome 17 - NC_072415.2Genomic Context describing neighboring genes Neighboring gene DLG associated protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC107969448 Neighboring gene uncharacterized LOC741407 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC112206240

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Accelerated evolution of nervous system genes in the origin of Homo sapiens. Dorus S, et al. Cell, 2004 Dec 29. PMID 15620360

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein TGIF1
    Names
    5'-TG-3'-interacting factor 1
    TG-interacting factor
    TGFB-induced factor (TALE family homeobox)
    transforming growth factor-beta-induced factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009815.1 → NP_001009815.1  homeobox protein TGIF1

      See identical proteins and their annotated locations for NP_001009815.1

      Status: PROVISIONAL

      Source sequence(s)
      AY665270
      UniProtKB/Swiss-Prot
      Q5IS58
      UniProtKB/TrEMBL
      A0A2J8MP40, A0A663D7V1, K7B0E0, K7D3K7
      Related
      ENSPTRP00000016743.3, ENSPTRT00000018072.4
      Conserved Domains (1) summary
      pfam05920
      Location:182 → 221
      Homeobox_KN; Homeobox KN domain

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072415.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      27430044..27440784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009433726.4 → XP_009432001.1  homeobox protein TGIF1 isoform X3

      See identical proteins and their annotated locations for XP_009432001.1

      UniProtKB/TrEMBL
      A0A2J8MP50, A0A6D2XHF9, K7BHQ2
      Related
      ENSPTRP00000073447.1
      Conserved Domains (1) summary
      pfam05920
      Location:67 → 106
      Homeobox_KN; Homeobox KN domain

    2. XM_009433732.5 → XP_009432007.1  homeobox protein TGIF1 isoform X2

      See identical proteins and their annotated locations for XP_009432007.1

      UniProtKB/TrEMBL
      A0A2J8MP46, A0A2J8MP47
      Conserved Domains (1) summary
      pfam05920
      Location:33 → 72
      Homeobox_KN; Homeobox KN domain

    3. XM_009433728.5 → XP_009432003.1  homeobox protein TGIF1 isoform X1

      See identical proteins and their annotated locations for XP_009432003.1

      UniProtKB/TrEMBL
      A0A2J8MP32, A0A2J8MP47, A0A6D2WUA4, K7C433
      Related
      ENSPTRP00000063638.1
      Conserved Domains (1) summary
      pfam05920
      Location:53 → 92
      Homeobox_KN; Homeobox KN domain

    4. XM_054671654.2 → XP_054527629.1  homeobox protein TGIF1 isoform X2

      UniProtKB/TrEMBL
      A0A2J8MP46

    5. XM_009433729.5 → XP_009432004.1  homeobox protein TGIF1 isoform X2

      See identical proteins and their annotated locations for XP_009432004.1

      UniProtKB/TrEMBL
      A0A2J8MP46, A0A2J8MP47
      Conserved Domains (1) summary
      pfam05920
      Location:33 → 72
      Homeobox_KN; Homeobox KN domain

    6. XM_009433730.5 → XP_009432005.1  homeobox protein TGIF1 isoform X2

      See identical proteins and their annotated locations for XP_009432005.1

      UniProtKB/TrEMBL
      A0A2J8MP46, A0A2J8MP47
      Conserved Domains (1) summary
      pfam05920
      Location:33 → 72
      Homeobox_KN; Homeobox KN domain

    7. XM_054671653.2 → XP_054527628.1  homeobox protein TGIF1 isoform X2

      UniProtKB/TrEMBL
      A0A2J8MP46

    8. XM_009433731.5 → XP_009432006.1  homeobox protein TGIF1 isoform X2

      See identical proteins and their annotated locations for XP_009432006.1

      UniProtKB/TrEMBL
      A0A2J8MP46, A0A2J8MP47
      Conserved Domains (1) summary
      pfam05920
      Location:33 → 72
      Homeobox_KN; Homeobox KN domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5IS58.1 GenPept UniProtKB/Swiss-Prot:Q5IS58

    Gene LinkOut

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