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    HMGB1 high mobility group box 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 452518, updated on 3-Apr-2024

    Summary

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    Gene symbol
    HMGB1
    Gene description
    high mobility group box 1
    Locus tag
    CK820_G0019786
    See related
    Ensembl:ENSPTRG00000048008
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 14 NC_072412.2 (29630326..29788317, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 13 NC_072411.1 (24402513..24560424, complement)

    Chromosome 14 - NC_072412.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104001807 Neighboring gene ubiquitin conjugating enzyme E2 L5 Neighboring gene uncharacterized LOC134808118 Neighboring gene pre-mRNA-splicing factor RBM22-like Neighboring gene tyrosine-protein phosphatase non-receptor type 2-like Neighboring gene ubiquitin specific peptidase like 1 Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene arachidonate 5-lipoxygenase activating protein Neighboring gene uncharacterized LOC104001814

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding, bending IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group protein B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072412.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      29630326..29788317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054665163.2 → XP_054521138.1  high mobility group protein B1 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SBZ9, A0A2J8MLR6, A0A6D2XKS4

    2. XM_054665161.2 → XP_054521136.1  high mobility group protein B1 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SBZ9, A0A2J8MLR6, A0A6D2XKS4

    3. XM_509611.8 → XP_509611.1  high mobility group protein B1 isoform X1

      See identical proteins and their annotated locations for XP_509611.1

      UniProtKB/TrEMBL
      A0A2I3SBZ9, A0A2I3TEV6, A0A2J8MLR6, A0A6D2XKS4
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain

    4. XM_054665166.2 → XP_054521141.1  high mobility group protein B1 isoform X2

      UniProtKB/TrEMBL
      A0A2I3SKE1, A0A2J8MLU3, A0A6D2Y8C0

    5. XM_003952381.5 → XP_003952430.1  high mobility group protein B1 isoform X1

      See identical proteins and their annotated locations for XP_003952430.1

      UniProtKB/TrEMBL
      A0A2I3SBZ9, A0A2I3TEV6, A0A2J8MLR6, A0A6D2XKS4
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain

    6. XM_001140491.8 → XP_001140491.1  high mobility group protein B1 isoform X1

      See identical proteins and their annotated locations for XP_001140491.1

      UniProtKB/TrEMBL
      A0A2I3SBZ9, A0A2I3TEV6, A0A2J8MLR6, A0A6D2XKS4
      Related
      ENSPTRP00000074016.1
      Conserved Domains (2) summary
      pfam00505
      Location:95 → 162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:6 → 78
      HMG_box_2; HMG-box domain

    7. XM_054665164.2 → XP_054521139.1  high mobility group protein B1 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SBZ9, A0A2J8MLR6, A0A6D2XKS4

    8. XM_054665162.2 → XP_054521137.1  high mobility group protein B1 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SBZ9, A0A2J8MLR6, A0A6D2XKS4

    9. XM_063792030.1 → XP_063648100.1  high mobility group protein B1 isoform X2

      UniProtKB/TrEMBL
      A0A2I3SKE1, A0A2J8MLU3, A0A6D2Y8C0
    Nucleotide Protein
    Heading Accession and Version

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