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    apoa1 apolipoprotein A-I [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448709, updated on 25-Jan-2024

    Summary

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    Official Symbol
    apoa1provided by Xenbase
    Official Full Name
    apolipoprotein A-Iprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-962591
    See related
    Ensembl:ENSXETG00000003763
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (82229654..82233157)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (83976728..83980240, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene SID1 transmembrane family member 2 Neighboring gene platelet activating factor acetylhydrolase 1b catalytic subunit 2 Neighboring gene SIK family kinase 3 Neighboring gene uncharacterized LOC100493376 Neighboring gene provisional ortholog of apolipoprotein A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC89745

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables amino acid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables dimethylargininase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in arginine metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within cholesterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in citrulline metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within lipoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of nitric oxide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within steroid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    apolipoprotein A-I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005127.1 → NP_001005127.1  apolipoprotein A-I precursor

      See identical proteins and their annotated locations for NP_001005127.1

      Status: PROVISIONAL

      Source sequence(s)
      BC077663
      UniProtKB/TrEMBL
      F7AAP7, Q6DDC5
      Related
      ENSXETP00000008146.5, ENSXETT00000008146.5
      Conserved Domains (1) summary
      pfam01442
      Location:73 → 250
      Apolipoprotein; Apolipoprotein A1/A4/E domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      82229654..82233157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012966446.3 → XP_012821900.1  apolipoprotein A-I isoform X1

      UniProtKB/TrEMBL
      A0A8J0SS71
      Conserved Domains (1) summary
      pfam01442
      Location:85 → 262
      Apolipoprotein; Apolipoprotein A1/A4/E domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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