U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ubxn1 UBX domain protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448372, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ubxn1provided by Xenbase
    Official Full Name
    UBX domain protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-979857
    See related
    Ensembl:ENSXETG00000005477
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    2b28; saks1; ubxd10; ubxn1-a; ubxn1-b
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ubxn1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (37008504..37017626)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (41705194..41721324)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA57 Neighboring gene LBH domain containing 1 Neighboring gene citrate synthase lysine methyltransferase Neighboring gene testis expressed metallothionein like protein Neighboring gene uncharacterized LOC116410563

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC89251

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    involved_in ERAD pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    UBX domain-containing protein 1
    Names
    SAPK substrate protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004957.1 → NP_001004957.1  UBX domain-containing protein 1

      See identical proteins and their annotated locations for NP_001004957.1

      Status: PROVISIONAL

      Source sequence(s)
      BC075456
      UniProtKB/Swiss-Prot
      Q6GL77
      Related
      ENSXETP00000115406.1, ENSXETT00000106463.1
      Conserved Domains (2) summary
      cd14302
      Location:5 → 45
      UBA_UBXN1; UBA domain found in UBX domain-containing protein 1 (UBXN1) and similar proteins
      cd01772
      Location:204 → 285
      UBX_UBXN1; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 1 (UBXN1) and similar proteins

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      37008504..37017626
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012954326.3 → XP_012809780.1  UBX domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_012809780.1

      UniProtKB/Swiss-Prot
      Q6GL77
      Related
      ENSXETP00000115283.1, ENSXETT00000122036.1
      Conserved Domains (2) summary
      cd14302
      Location:5 → 45
      UBA_UBXN1; UBA domain found in UBX domain-containing protein 1 (UBXN1) and similar proteins
      cd01772
      Location:204 → 285
      UBX_UBXN1; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 1 (UBXN1) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GL77.1 GenPept UniProtKB/Swiss-Prot:Q6GL77

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.