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    LOC4347461 ER membrane protein complex subunit 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347461, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347461
    Gene description
    ER membrane protein complex subunit 3
    Locus tag
    OSNPB_090497400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 83.6), flower buds (RPKM 78.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19235196..19238673)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene probable mitochondrial adenine nucleotide transporter BTL1 Neighboring gene pumilio homolog 5 Neighboring gene ervatamin-B Neighboring gene uncharacterized LOC4347464

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs. Norton GJ, et al. Genomics, 2008 Nov. PMID 18755262
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein folding in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of EMC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ER membrane protein complex subunit 3
    Names
    Os09g0497400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      19235196..19238673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795725.2 → XP_015651211.1  ER membrane protein complex subunit 3

      UniProtKB/TrEMBL
      A0A0P0XQ17, A2Z2Q2, A3C0A0, Q0J0J5
      Conserved Domains (1) summary
      pfam01956
      Location:4 → 194
      DUF106; Integral membrane protein DUF106
    Nucleotide Protein
    Heading Accession and Version

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