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    LOC4344850 cysteine-rich PDZ-binding protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344850, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344850
    Gene description
    cysteine-rich PDZ-binding protein
    Locus tag
    OSNPB_080190800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 42.5), flowers (RPKM 39.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5318645..5320914, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance RPP13-like protein 3 Neighboring gene CAP-Gly domain-containing linker protein 1 Neighboring gene protein PIN-LIKES 2 Neighboring gene putative aconitate hydratase, cytoplasmic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-rich PDZ-binding protein
    Names
    B1099H05.53
    Os08g0190800
    P0610E02.29
    putative postsynaptic protein CRIPT

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      5318645..5320914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793242.2 → XP_015648728.1  cysteine-rich PDZ-binding protein

      UniProtKB/TrEMBL
      A0A0P0XD58, A2YS00, A3BQD0, Q0J7I3, Q6YZ89
      Conserved Domains (1) summary
      pfam10235
      Location:11 → 94
      Cript; Microtubule-associated protein CRIPT
    Nucleotide Protein
    Heading Accession and Version

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