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    LOC4339546 ATP synthase subunit beta, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339546, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4339546
    Gene description
    ATP synthase subunit beta, mitochondrial-like
    Locus tag
    OSNPB_050553000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    atpB; OJ1263_E10.1
    Expression
    Ubiquitous expression in flowers (RPKM 287.5), flower buds (RPKM 217.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27509816..27513344, complement)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339544 Neighboring gene 65-kDa microtubule-associated protein 3 Neighboring gene uncharacterized LOC112938988 Neighboring gene transcription factor RAX2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton motive force-driven mitochondrial ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial proton-transporting ATP synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP synthase subunit beta, mitochondrial
    Names
    ATP synthase beta chain
    LOC_Os05g47980
    OSJNBa0079H23.20
    mitochondrial F1-ATPase beta subunit
    XP_015640019.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402623.1 → NP_001389552.1  ATP synthase subunit beta, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AU197246, CA998798, CB000337, CF322471, CI309234, CI348305
      UniProtKB/Swiss-Prot
      Q01859, Q0DG48, Q6I636
      UniProtKB/TrEMBL
      A0A067Y2M2

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27509816..27513344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784533.2 → XP_015640019.1  ATP synthase subunit beta, mitochondrial

      UniProtKB/Swiss-Prot
      Q01859
      UniProtKB/TrEMBL
      A0A067Y2M2
      Conserved Domains (2) summary
      PRK09280
      Location:79 → 547
      PRK09280; F0F1 ATP synthase subunit beta; Validated
      pfam11421
      Location:1 → 42
      Synthase_beta; ATP synthase F1 beta subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q01859.2 GenPept UniProtKB/Swiss-Prot:Q01859

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