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    LOC4338614 cell division control protein 48 homolog B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338614, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4338614
    Gene description
    cell division control protein 48 homolog B-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 6.5), leaves before flowering (RPKM 6.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18158368..18161173)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene uncharacterized LOC107280863 Neighboring gene RNA-binding protein Musashi homolog Rbp6-like Neighboring gene protein CHROMOSOME TRANSMISSION FIDELITY 7 Neighboring gene probable folate-biopterin transporter 2 Neighboring gene uncharacterized LOC4338617

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: cell division control protein 48 homolog B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18158368..18161173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025736.1 → XP_025881521.1  LOW QUALITY PROTEIN: cell division control protein 48 homolog B-like

      UniProtKB/TrEMBL
      Q0DIM9, Q6AUP8
      Conserved Domains (1) summary
      cl27568
      Location:9 → 384
      TIP49; TIP49 C-terminus
    Nucleotide Protein
    Heading Accession and Version

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