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    LOC4336045 ran guanine nucleotide release factor [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336045, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4336045
    Gene description
    ran guanine nucleotide release factor
    Locus tag
    OSNPB_040459600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 57.8), flowers (RPKM 22.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22939378..22942389, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336043 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic Neighboring gene NAP1-related protein 1-like Neighboring gene ATP-dependent RNA helicase SUV3L, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ran guanine nucleotide release factor
    Names
    Os04g0459600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419392.1 → NP_001406321.1  ran guanine nucleotide release factor isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK061516, AP014960, CI288336, CI651511
      UniProtKB/TrEMBL
      Q01IJ5, Q0JCN8, Q7X8P2

    2. NM_001419393.1 → NP_001406322.1  ran guanine nucleotide release factor isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK061516, AP014960, CI288336, CI651511, CI760454

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22939378..22942389 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780503.2 → XP_015635989.1  ran guanine nucleotide release factor isoform X1

      UniProtKB/TrEMBL
      Q7X8P2
      Conserved Domains (1) summary
      pfam04603
      Location:10 → 150
      Mog1; Ran-interacting Mog1 protein

    2. XM_015780504.2 → XP_015635990.1  ran guanine nucleotide release factor isoform X2

      Conserved Domains (1) summary
      pfam04603
      Location:10 → 138
      Mog1; Ran-interacting Mog1 protein
    Nucleotide Protein
    Heading Accession and Version

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