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    LOC4327004 60S ribosomal protein L18a-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327004, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4327004
    Gene description
    60S ribosomal protein L18a-like
    Locus tag
    OSNPB_010752300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RPL18A; OsJ_03475
    Expression
    Ubiquitous expression in flower buds (RPKM 177.9), flowers (RPKM 118.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31559227..31560860, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At4g10955 Neighboring gene F-box/LRR-repeat protein At5g02910 Neighboring gene 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 Neighboring gene glucosidase 2 subunit beta-like Neighboring gene pathogenesis-related genes transcriptional activator PTI5 Neighboring gene probable lipid-A-disaccharide synthase, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL20; 60S ribosomal protein L18a
    Names
    LOC_Os01g54870
    P0046E05.38
    P0435B05.19
    putative ribosomal protein L18a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409030.1 → NP_001395959.1  large ribosomal subunit protein eL20

      Status: VALIDATED

      Source sequence(s)
      AP014957, AU058247, CI342258, CI345863, CI615228
      UniProtKB/Swiss-Prot
      A0A0P0V8B3, Q0JJA0, Q943F3
      UniProtKB/TrEMBL
      A2WV44

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31559227..31560860 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766480.2 → XP_015621966.1  60S ribosomal protein L18a

      UniProtKB/Swiss-Prot
      Q943F3
      Conserved Domains (1) summary
      pfam01775
      Location:82 → 129
      Ribosomal_L18A; Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q943F3.1 GenPept UniProtKB/Swiss-Prot:Q943F3

    Gene LinkOut

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