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    LOC4324384 calmodulin [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324384, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4324384
    Gene description
    calmodulin
    Locus tag
    OSNPB_010267900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CAM; CAM1; CaM-1; CAM1-1; CAM1-2; CAM1-3; OsJ_25643; OsJ_001186; OsJ_010214; OsJ_024630; OJ1150_E04.120-1; OJ1200_C08.124-1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 145.4), leaves after flowering (RPKM 100.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9195526..9198964, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene SUN domain-containing protein 1 Neighboring gene serine/threonine-protein kinase-like protein At5g23170 Neighboring gene probable peptide/nitrate transporter At3g43790 Neighboring gene DNA gyrase subunit B, chloroplastic/mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables enzyme regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-1
    Names
    Calmodulin-1
    LOC_Os01g16240
    LOC_Os03g20370
    LOC_Os07g48780
    P0011D01.22
    XP_015622341.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428106.1 → NP_001415035.1  calmodulin-1

      Status: VALIDATED

      Source sequence(s)
      AU184693, AU312213, CB651035
      UniProtKB/Swiss-Prot
      A2WN93, A2XG28, A2YQ37, A2ZRL4, A3BNK8, A6N0J2, B7EHB8, O49184, P29612, Q0JNS6, Q10M88, Q7F8I8
      UniProtKB/TrEMBL
      B8AC80

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      9195526..9198964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766855.2 → XP_015622341.1  calmodulin-1

      Conserved Domains (1) summary
      PTZ00184
      Location:1 → 149
      PTZ00184; calmodulin; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JNS6.2 GenPept UniProtKB/Swiss-Prot:Q0JNS6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials