PCDH8 protocadherin 8 [Gallus gallus (chicken)] - Gene

Summary

Symbol: PCDH8provided by CGNC
Full Name: protocadherin 8provided by CGNC
Primary source: CGNC:53254
See related: Ensembl:ENSGALG00010002987
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: protocadherin-8
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	1	NC_052532.1 (165580780..165585023)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	1	NC_052573.1 (165666620..165670863)

Chromosome 1 - NC_052532.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

in chicken and mouse embryos, PAPC expression is tightly regulated by the clock and wavefront system in the posterior PSM and exhibits a striking complementary pattern to N-cadherin
Title: PAPC couples the segmentation clock to somite morphogenesis by regulating N-cadherin-dependent adhesion.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protocadherin-8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001098609.2 → NP_001092079.2 protocadherin-8 precursor

Status: PROVISIONAL

Source sequence(s)

JAENSK010000027

UniProtKB/TrEMBL

A5Y5L6

Conserved Domains (1) summary

cd11304
Location:238 → 338

Cadherin_repeat; Cadherin tandem repeat domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

165580780..165585023

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015275767.4 → XP_015131253.2 protocadherin-8 isoform X1

UniProtKB/TrEMBL

A0A8V0XC52, A5Y5L6

Related

ENSGALP00010004243.1, ENSGALT00010006980.1

Conserved Domains (1) summary

cd11304
Location:238 → 338

Cadherin_repeat; Cadherin tandem repeat domain
XM_040701528.2 → XP_040557462.1 protocadherin-8 isoform X2

UniProtKB/TrEMBL

I6NC70

Conserved Domains (1) summary

cd11304
Location:238 → 338

Cadherin_repeat; Cadherin tandem repeat domain