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    EEFSEC eukaryotic elongation factor, selenocysteine-tRNA specific [ Gallus gallus (chicken) ]

    Gene ID: 416021, updated on 5-Mar-2024

    Summary

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    Symbol
    EEFSECprovided by CGNC
    Full Name
    eukaryotic elongation factor, selenocysteine-tRNA specificprovided by CGNC
    Primary source
    CGNC:4417
    See related
    Ensembl:ENSGALG00010026943
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (9572889..9690092, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (9600902..9717859, complement)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750361 Neighboring gene GATA binding protein 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member B8 Neighboring gene microRNA 1572 Neighboring gene uncharacterized LOC121106608 Neighboring gene RuvB like AAA ATPase 1 Neighboring gene Sec61 translocon alpha 1 subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in selenocysteine incorporation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    selenocysteine-specific elongation factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      9572889..9690092 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015293369.4 → XP_015148855.1  selenocysteine-specific elongation factor isoform X2

      Conserved Domains (3) summary
      cd03696
      Location:112 → 194
      SelB_II; Domain II of elongation factor SelB
      cd04094
      Location:199 → 332
      eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
      cl38936
      Location:1 → 99
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_015293368.4 → XP_015148854.1  selenocysteine-specific elongation factor isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKC4
      Related
      ENSGALP00010039768.1, ENSGALT00010065335.1
      Conserved Domains (3) summary
      cd01889
      Location:13 → 201
      SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
      cd03696
      Location:214 → 296
      SelB_II; Domain II of elongation factor SelB
      cd04094
      Location:301 → 434
      eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9600902..9717859 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040682318.2 → XP_040538252.1  selenocysteine-specific elongation factor isoform X2

      Conserved Domains (3) summary
      cd03696
      Location:112 → 194
      SelB_II; Domain II of elongation factor SelB
      cd04094
      Location:199 → 332
      eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
      cl38936
      Location:1 → 99
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_040682317.2 → XP_040538251.1  selenocysteine-specific elongation factor isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKC4
      Conserved Domains (3) summary
      cd01889
      Location:13 → 201
      SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
      cd03696
      Location:214 → 296
      SelB_II; Domain II of elongation factor SelB
      cd04094
      Location:301 → 434
      eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
    Nucleotide Protein
    Heading Accession and Version

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