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    PTRF polymerase I and transcript release factor [ Gallus gallus (chicken) ]

    Gene ID: 396006, updated on 3-Apr-2024

    Summary

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    Symbol
    PTRFprovided by CGNC
    Full Name
    polymerase I and transcript release factorprovided by CGNC
    Primary source
    CGNC:2369
    See related
    Ensembl:ENSGALG00010021165
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CAVIN1
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 27
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 27 NC_052558.1 (4911094..4925658, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 27 NC_052599.1 (6073159..6087724, complement)

    Chromosome 27 - NC_052558.1Genomic Context describing neighboring genes Neighboring gene signal transducer and activator of transcription 5A Neighboring gene microRNA mir-12257 Neighboring gene signal transducer and activator of transcription 3 Neighboring gene ATPase H+ transporting V0 subunit a1 Neighboring gene N-acetylglucosaminidase, alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA primary transcript binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in termination of RNA polymerase I transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase I promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in caveola IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caveolae-associated protein 1
    Names
    caveolae associated protein 1
    leucine-zipper protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397414.1 → NP_001384343.1  caveolae-associated protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the more frequent splicing isoform with the long intron.
      Source sequence(s)
      AL584498, BI064604, BM490361, BU360314, BU447691, BU474268, BX269925, CD216104, CO503950, D26315, JAENSK010000365
      UniProtKB/TrEMBL
      Q90838
      Related
      ENSGALP00010030544.1, ENSGALT00010051353.1
      Conserved Domains (1) summary
      pfam15237
      Location:31 → 299
      PTRF_SDPR; PTRF/SDPR family

    2. NM_001397415.1 → NP_001384344.1  caveolae-associated protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) is the less frequent splicing isoform with the short intron.
      Source sequence(s)
      BU440954, BU444324, BU477373, BU484214, CD214881, D82080, JAENSK010000365
      UniProtKB/TrEMBL
      Q90899
      Conserved Domains (1) summary
      pfam15237
      Location:31 → 144
      PTRF_SDPR; PTRF/SDPR family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052558.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4911094..4925658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052599.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6073159..6087724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001471.1: Suppressed sequence

      Description
      NM_001001471.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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