U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    pphln1 periphilin 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 394576, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    pphln1provided by Xenbase
    Official Full Name
    periphilin 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-962555
    See related
    Ensembl:ENSXETG00000026823
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ga50; periphilin; periphilin1
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (64793462..64848938, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (55244470..55298281, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 20 Neighboring gene prickle planar cell polarity protein 1 Neighboring gene zinc finger CCHC-type and RNA binding motif containing 1 Neighboring gene YY1 associated factor 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC75908

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in negative regulation of gene expression, epigenetic IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein localization to heterochromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    periphilin-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_203648.1 → NP_988979.1  periphilin-1

      See identical proteins and their annotated locations for NP_988979.1

      Status: PROVISIONAL

      Source sequence(s)
      BC061358
      UniProtKB/TrEMBL
      A0A6I8R1R2, Q6P871
      Conserved Domains (1) summary
      pfam11488
      Location:269 → 325
      Lge1; Transcriptional regulatory protein LGE1

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      64793462..64848938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031897775.1 → XP_031753635.1  periphilin-1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PMD0, A0A6I8R1R2
      Related
      ENSXETP00000056298.4, ENSXETT00000056298.4
      Conserved Domains (1) summary
      pfam11488
      Location:261 → 334
      Lge1; Transcriptional regulatory protein LGE1

    2. XM_012958754.2 → XP_012814208.2  periphilin-1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8R1R2, A0A8J0SF42
      Conserved Domains (1) summary
      pfam11488
      Location:213 → 286
      Lge1; Transcriptional regulatory protein LGE1

    3. XM_012958753.2 → XP_012814207.2  periphilin-1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PMD0, A0A6I8R1R2
      Conserved Domains (1) summary
      pfam11488
      Location:261 → 334
      Lge1; Transcriptional regulatory protein LGE1

    4. XM_031897777.1 → XP_031753637.1  periphilin-1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PMD0, A0A6I8R1R2
      Conserved Domains (1) summary
      pfam11488
      Location:261 → 334
      Lge1; Transcriptional regulatory protein LGE1

    5. XM_031897776.1 → XP_031753636.1  periphilin-1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PMD0, A0A6I8R1R2
      Conserved Domains (1) summary
      pfam11488
      Location:261 → 334
      Lge1; Transcriptional regulatory protein LGE1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.