U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Usp19 ubiquitin specific peptidase 19 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361190, updated on 11-Apr-2024

    Summary

    Official Symbol
    Usp19provided by RGD
    Official Full Name
    ubiquitin specific peptidase 19provided by RGD
    Primary source
    RGD:1303276
    See related
    Ensembl:ENSRNOG00000049531 AllianceGenome:RGD:1303276
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable Hsp90 protein binding activity; deubiquitinase activity; and ubiquitin protein ligase binding activity. Involved in positive regulation of cell cycle process; protein deubiquitination; and regulation of protein stability. Predicted to be located in cytosol and endoplasmic reticulum membrane. Orthologous to human USP19 (ubiquitin specific peptidase 19). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Muscle (RPKM 264.0), Adrenal (RPKM 244.8) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    8q32
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (118069227..118080283)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109190727..109201761)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117280690..117291729)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 71 Neighboring gene laminin subunit beta 2 Neighboring gene glutaminyl-tRNA synthetase 1 Neighboring gene glutamine-rich 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables Hsp90 protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables Hsp90 protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables K48-linked deubiquitinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables cysteine-type deubiquitinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables cysteine-type deubiquitinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ubiquitin protein ligase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in ERAD pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in ERAD pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in ERAD pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in ERAD pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of proteasomal protein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of skeletal muscle tissue development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of skeletal muscle tissue development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of cell cycle process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein stabilization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein stabilization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of ERAD pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of ERAD pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cellular response to hypoxia IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of cellular response to hypoxia ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cellular response to hypoxia ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of protein stability IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to endoplasmic reticulum stress ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to endoplasmic reticulum stress ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 19
    Names
    deubiquitinating enzyme 19
    ubiquitin specific protease 19
    ubiquitin thioesterase 19
    ubiquitin thiolesterase 19
    ubiquitin-specific-processing protease 19
    NP_001001516.1
    XP_006243855.1
    XP_006243856.1
    XP_006243857.1
    XP_006243858.1
    XP_006243859.1
    XP_006243860.1
    XP_006243861.1
    XP_038937619.1
    XP_038937620.1
    XP_063121747.1
    XP_063121748.1
    XP_063121749.1
    XP_063121750.1
    XP_063121751.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001516.2NP_001001516.1  ubiquitin carboxyl-terminal hydrolase 19

      See identical proteins and their annotated locations for NP_001001516.1

      Status: PROVISIONAL

      Source sequence(s)
      AY605065
      UniProtKB/Swiss-Prot
      Q6J1Y9
      UniProtKB/TrEMBL
      M0RDN9
      Conserved Domains (7) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:327423
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      cd02674
      Location:10941251
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:537723
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam01753
      Location:830872
      zf-MYND; MYND finger
      pfam14533
      Location:737793
      USP7_C2; Ubiquitin-specific protease C-terminal
      pfam16602
      Location:414534
      USP19_linker; Linker region of USP19 deubiquitinase

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      118069227..118080283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006243797.5XP_006243859.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X8

      See identical proteins and their annotated locations for XP_006243859.1

      UniProtKB/TrEMBL
      A0A8I5ZMS3, A6I360
      Related
      ENSRNOP00000069554.2
      Conserved Domains (7) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:327423
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      cd02674
      Location:10961253
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:539725
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam01753
      Location:832874
      zf-MYND; MYND finger
      pfam14533
      Location:739795
      USP7_C2; Ubiquitin-specific protease C-terminal
      pfam16602
      Location:414536
      USP19_linker; Linker region of USP19 deubiquitinase
    2. XM_006243799.5XP_006243861.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X10

      UniProtKB/TrEMBL
      A0A8I5ZMS3
      Conserved Domains (7) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:327423
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      cd02674
      Location:10941251
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:537723
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam01753
      Location:830872
      zf-MYND; MYND finger
      pfam14533
      Location:737793
      USP7_C2; Ubiquitin-specific protease C-terminal
      pfam16602
      Location:414534
      USP19_linker; Linker region of USP19 deubiquitinase
    3. XM_006243798.5XP_006243860.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X9

      UniProtKB/TrEMBL
      A0A8I5ZMS3
      Related
      ENSRNOP00000078495.1
      Conserved Domains (7) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:326422
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      cd02674
      Location:10951252
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:538724
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam01753
      Location:831873
      zf-MYND; MYND finger
      pfam14533
      Location:738794
      USP7_C2; Ubiquitin-specific protease C-terminal
      pfam16602
      Location:413535
      USP19_linker; Linker region of USP19 deubiquitinase
    4. XM_039081692.2XP_038937620.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X11

      UniProtKB/TrEMBL
      A0A8I5ZMS3
      Conserved Domains (4) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:326422
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      COG5560
      Location:5311253
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
      pfam16602
      Location:413533
      USP19_linker; Linker region of USP19 deubiquitinase
    5. XM_063265679.1XP_063121749.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X12

      UniProtKB/TrEMBL
      A0A0G2JVN4
    6. XM_063265681.1XP_063121751.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X14

    7. XM_063265680.1XP_063121750.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X13

    8. XM_006243793.5XP_006243855.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X1

      See identical proteins and their annotated locations for XP_006243855.1

      UniProtKB/TrEMBL
      A6I361, M0RDN9
      Conserved Domains (7) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:327423
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      cd02674
      Location:10961253
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:539725
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam01753
      Location:832874
      zf-MYND; MYND finger
      pfam14533
      Location:739795
      USP7_C2; Ubiquitin-specific protease C-terminal
      pfam16602
      Location:414536
      USP19_linker; Linker region of USP19 deubiquitinase
    9. XM_006243795.5XP_006243857.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X3

      UniProtKB/TrEMBL
      M0RDN9
      Related
      ENSRNOP00000067744.2
      Conserved Domains (7) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:327423
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      cd02674
      Location:10941251
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:537723
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam01753
      Location:830872
      zf-MYND; MYND finger
      pfam14533
      Location:737793
      USP7_C2; Ubiquitin-specific protease C-terminal
      pfam16602
      Location:414534
      USP19_linker; Linker region of USP19 deubiquitinase
    10. XM_006243794.5XP_006243856.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X2

      UniProtKB/TrEMBL
      M0RDN9
      Conserved Domains (4) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:326422
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      COG5560
      Location:5331255
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
      pfam16602
      Location:413535
      USP19_linker; Linker region of USP19 deubiquitinase
    11. XM_039081691.2XP_038937619.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X4

      UniProtKB/TrEMBL
      M0RDN9
      Conserved Domains (4) summary
      cd06463
      Location:58140
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:326422
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      COG5560
      Location:5311253
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
      pfam16602
      Location:413533
      USP19_linker; Linker region of USP19 deubiquitinase
    12. XM_006243796.5XP_006243858.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AF46, M0RDN9
      Related
      ENSRNOP00000090860.1
      Conserved Domains (7) summary
      cd06463
      Location:50132
      p23_like; Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including ...
      cd06466
      Location:319415
      p23_CS_SGT1_like; p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has ...
      cd02674
      Location:10881245
      Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl02553
      Location:531717
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam01753
      Location:824866
      zf-MYND; MYND finger
      pfam14533
      Location:731787
      USP7_C2; Ubiquitin-specific protease C-terminal
      pfam16602
      Location:406528
      USP19_linker; Linker region of USP19 deubiquitinase
    13. XM_063265678.1XP_063121748.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X7

    14. XM_063265677.1XP_063121747.1  ubiquitin carboxyl-terminal hydrolase 19 isoform X6

    RNA

    1. XR_005487861.2 RNA Sequence