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    Fbxo47 F-box protein 47 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360615, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Fbxo47provided by RGD
    Official Full Name
    F-box protein 47provided by RGD
    Primary source
    RGD:1559709
    See related
    Ensembl:ENSRNOG00000036882 AllianceGenome:RGD:1559709
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559709
    Summary
    Orthologous to human FBXO47 (F-box protein 47). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 8.8), Spleen (RPKM 4.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    10q31
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (83331750..83376669, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (82849514..82880337, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (85798987..85829770, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene transfer RNA cysteine (anticodon GCA) 34 Neighboring gene transfer RNA cysteine (anticodon GCA) 35 Neighboring gene LIM and SH3 protein 1 Neighboring gene U7 small nuclear RNA Neighboring gene plexin domain containing 1 Neighboring gene transfer RNA cysteine (anticodon GCA) 36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    F-box only protein 47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      83331750..83376669 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270147.1 → XP_063126217.1  F-box only protein 47 isoform X2

    2. XM_039087733.2 → XP_038943661.1  F-box only protein 47 isoform X1

      UniProtKB/TrEMBL
      D4AA98
      Related
      ENSRNOP00000052246.5
      Conserved Domains (1) summary
      pfam00646
      Location:47 → 78
      F-box; F-box domain

    3. XM_039087734.2 → XP_038943662.1  F-box only protein 47 isoform X2

    4. XM_039087732.2 → XP_038943660.1  F-box only protein 47 isoform X1

      UniProtKB/TrEMBL
      D4AA98
      Conserved Domains (1) summary
      pfam00646
      Location:47 → 78
      F-box; F-box domain
    Nucleotide Protein Strain
    Heading Accession and Version

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