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    SPAC144.12 putative ribose 5-phosphate isomerase [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542821, updated on 11-Apr-2024

    Summary

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    Gene symbol
    SPAC144.12
    Gene description
    putative ribose 5-phosphate isomerase
    Primary source
    PomBase:SPAC144.12
    Locus tag
    SPAC144.12
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (4675116..4678174)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene RNA polymerase III transcription factor TFIIIA Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene pig-W Neighboring gene miscRNA Neighboring gene 40S ribosomal protein S11 Neighboring gene CDK inhibitor Srw1 Neighboring gene kinesin-like protein Klp8 Neighboring gene putative COG complex subunit Cog1 Neighboring gene putative 6-phosphofructo-2-kinase Neighboring gene putative sister chromatid cohesion protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Repression of enzymes of the pentose phosphate pathway by glucose in fission yeast. Mehta S, et al. FEBS Lett, 1998 Dec 4. PMID 9872416
    2. Global coordination of transcriptional control and mRNA decay during cellular differentiation. Amorim MJ, et al. Mol Syst Biol, 2010 Jun 8. PMID 20531409, Free PMC Article
    3. Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions. Nie M, et al. J Biol Chem, 2012 Aug 24. PMID 22730331, Free PMC Article
    4. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
    5. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables ribose-5-phosphate isomerase activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables ribose-5-phosphate isomerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in D-ribose metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in pentose-phosphate shunt, non-oxidative branch EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt, non-oxidative branch IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative ribose 5-phosphate isomerase
    NP_594673.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4675116..4678174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020102.2 → NP_594673.1  putative ribose 5-phosphate isomerase [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594673.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9UTL3
      Conserved Domains (1) summary
      COG0120
      Location:11 → 243
      RpiA; Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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