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    rdh54 ATP-dependent DNA helicase Rdh54 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541798, updated on 11-Apr-2024

    Summary

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    Gene symbol
    rdh54
    Gene description
    ATP-dependent DNA helicase Rdh54
    Primary source
    PomBase:SPAC22F3.03c
    Locus tag
    SPAC22F3.03c
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    mug34; tid1
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    Genomic context

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    Location:
    chromosome: I
    Exon count:
    15
    Sequence:
    Chromosome: I; NC_003424.3 (703669..707990)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor Alp41 Neighboring gene putative AMP binding enzyme Neighboring gene tRNA-Val Neighboring gene transcription factor Atf31 Neighboring gene putative phosphoacetylglucosamine mutase Neighboring gene putative cytochrome c oxidase subunit IV Neighboring gene serine carboxypeptidase Sxa2 Neighboring gene putative cyclin L family cyclin Neighboring gene putative spore wall assembly protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional interactions of meiotic recombination factors Rdh54 and Dmc1. Chi P, et al. DNA Repair (Amst), 2009 Feb 1. PMID 19028606, Free PMC Article
    2. The Mek1 phosphorylation cascade plays a role in meiotic recombination of Schizosaccharomyces pombe. Tougan T, et al. Cell Cycle, 2010 Dec 1. PMID 21084840, Free PMC Article
    3. Schizosaccharomyces pombe Rdh54 (TID1) acts with Rhp54 (RAD54) to repair meiotic double-strand breaks. Catlett MG, et al. Mol Biol Cell, 2003 Nov. PMID 14551247, Free PMC Article
    4. The telomere bouquet facilitates meiotic prophase progression and exit in fission yeast. Moiseeva V, et al. Cell Discov, 2017. PMID 29123917, Free PMC Article
    5. Increased meiotic crossovers and reduced genome stability in absence of Schizosaccharomyces pombe Rad16 (XPF). Mastro TL, et al. Genetics, 2014 Dec. PMID 25293972, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding IC
    Inferred by Curator
    more info
    		  
    enables DNA translocase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in double-strand break repair via homologous recombination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in double-strand break repair via synthesis-dependent strand annealing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in reciprocal meiotic recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in reciprocal meiotic recombination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in transcription-coupled nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent DNA helicase Rdh54

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      703669..707990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018437.2 → NP_593038.2  ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593038.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q09772, Q7ZA42
      Conserved Domains (3) summary
      cd00046
      Location:230 → 373
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:208 → 504
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:531 → 647
      Helicase_C; Helicase conserved C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials