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    Bnip5 BCL2 interacting protein 5 [ Mus musculus (house mouse) ]

    Gene ID: 207819, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Bnip5provided by MGI
    Official Full Name
    BCL2 interacting protein 5provided by MGI
    Primary source
    MGI:MGI:1925441
    See related
    Ensembl:ENSMUSG00000048905 AllianceGenome:MGI:1925441
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9130014G02; 4930539E08Rik
    Summary
    Is expressed in several structures, including gallbladder; gut; nervous system; neural retina; and thymus. Orthologous to human BNIP5 (BCL2 interacting protein 5). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in colon adult (RPKM 12.1), small intestine adult (RPKM 11.6) and 7 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    17 A3.3; 17 15.03 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (29114248..29134310, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (28895274..28915336, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35883 Neighboring gene bromodomain and PHD finger containing, 3 Neighboring gene patatin-like phospholipase domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E11634 Neighboring gene STARR-seq mESC enhancer starr_42238 Neighboring gene STARR-seq mESC enhancer starr_42239 Neighboring gene STARR-positive B cell enhancer ABC_E9947 Neighboring gene RIKEN cDNA 1700030A11 gene Neighboring gene STARR-seq mESC enhancer starr_42241 Neighboring gene predicted gene 16191 Neighboring gene STARR-positive B cell enhancer ABC_E9948 Neighboring gene peroxisomal, testis specific 1 Neighboring gene STARR-positive B cell enhancer ABC_E2477 Neighboring gene potassium channel tetramerisation domain containing 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein BNIP5
    Names
    uncharacterized protein C6orf222 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172450.3 → NP_766038.1  protein BNIP5

      See identical proteins and their annotated locations for NP_766038.1

      Status: PROVISIONAL

      Source sequence(s)
      AC140278, CT025867
      Consensus CDS
      CCDS28586.1
      UniProtKB/Swiss-Prot
      B2KF61, Q148X2, Q8CC96
      Related
      ENSMUSP00000050646.5, ENSMUST00000062357.6
      Conserved Domains (1) summary
      pfam15661
      Location:31 → 669
      CF222; C6orf222, uncharacterized family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      29114248..29134310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006523956.3 → XP_006524019.1  protein BNIP5 isoform X1

      Conserved Domains (1) summary
      pfam15661
      Location:31 → 686
      CF222; C6orf222, uncharacterized family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CC96.1 GenPept UniProtKB/Swiss-Prot:Q8CC96

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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