rpl36a ribosomal protein L36A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rpl36aprovided by ZNC
Official Full Name: ribosomal protein L36Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-020423-1
See related: Ensembl:ENSDARG00000058105 AllianceGenome:ZFIN:ZDB-GENE-020423-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: bbr; rl44
Summary: Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and regulation of cell cycle. Predicted to be located in cytoplasm; membrane; and ribosome. Predicted to be integral component of membrane. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in central nervous system; digestive system; epithelial cell of pancreas; and pharyngeal arch. Orthologous to human RPL36A (ribosomal protein L36a) and RPL36AL (ribosomal protein L36a like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (22510632..22515188)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (22006832..22011388)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb13e06.x1 (e-PCR)
- UniSTS:190107

fb13e06.x1 (e-PCR)
- UniSTS:190108

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chordate embryonic development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of cell cycle	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
part_of cytosolic large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: large ribosomal subunit protein eL42

Names: 60S ribosomal protein L36a; 60S ribosomal protein L44; bubble brain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.