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    Opn1mw opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) [ Mus musculus (house mouse) ]

    Gene ID: 14539, updated on 11-Apr-2024

    Summary

    Official Symbol
    Opn1mwprovided by MGI
    Official Full Name
    opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)provided by MGI
    Primary source
    MGI:MGI:1097692
    See related
    Ensembl:ENSMUSG00000031394 AllianceGenome:MGI:1097692
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gcp; Rsvp; Opn1lw; ML-opsin
    Summary
    Predicted to enable G protein-coupled photoreceptor activity and identical protein binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage and signal transduction. Located in photoreceptor outer segment. Is expressed in eye; photoreceptor layer; photoreceptor layer outer segment; retina; and retina outer nuclear layer. Used to study blue cone monochromacy. Human ortholog(s) of this gene implicated in blue cone monochromacy and red color blindness. Orthologous to several human genes including OPN1LW (opsin 1, long wave sensitive) and OPN1MW2 (opsin 1, medium wave sensitive 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
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    Genomic context

    See Opn1mw in Genome Data Viewer
    Location:
    X; X A7.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (73171072..73194362)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (74127466..74150756)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene microRNA 718 Neighboring gene methyl CpG binding protein 2 Neighboring gene green (M) opsin gene upstream regulatory region Neighboring gene testis expressed 28 Neighboring gene ribosomal protein L3, pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled photoreceptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables photoreceptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cellular response to light stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in phototransduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within response to stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in photoreceptor outer segment IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in photoreceptor outer segment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in photoreceptor outer segment ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    medium-wave-sensitive opsin 1
    Names
    G/R opsin
    MWS opsin
    R/G opsin
    green LWS photopigment
    green cone photoreceptor pigment
    green long wavelength sensitive cone opsin
    green-sensitive opsin
    medium wavelength-sensitive cone opsin
    midwavelength sensitive opsin
    opsin 1 (cone pigments), long-wave-sensitive
    red sensitive visual pigment

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008106.2NP_032132.1  medium-wave-sensitive opsin 1

      See identical proteins and their annotated locations for NP_032132.1

      Status: VALIDATED

      Source sequence(s)
      AF011389, AK149287
      Consensus CDS
      CCDS30220.1
      UniProtKB/Swiss-Prot
      O35599, Q548Z4
      UniProtKB/TrEMBL
      B1AYN7
      Related
      ENSMUSP00000033771.5, ENSMUST00000033771.11
      Conserved Domains (1) summary
      pfam00001
      Location:66317
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      73171072..73194362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)