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    SIGMAR1 sigma non-opioid intracellular receptor 1 [ Gallus gallus (chicken) ]

    Gene ID: 100859748, updated on 8-Mar-2024

    Summary

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    Symbol
    SIGMAR1provided by CGNC
    Full Name
    sigma non-opioid intracellular receptor 1provided by CGNC
    Primary source
    CGNC:63401
    See related
    Ensembl:ENSGALG00010010671
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    OPRS1; Sigma1R
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Z
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (8478240..8481305, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (8478240..8481305, complement)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene dynactin subunit 3 Neighboring gene AT-rich interaction domain 3C Neighboring gene uncharacterized LOC121108636 Neighboring gene galactose-1-phosphate uridylyltransferase Neighboring gene uncharacterized LOC121108637

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    3. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sigma non-opioid intracellular receptor 1
    Names
    Sigma 1-type opioid receptor
    Sigma1-receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001270557.4 → NP_001257486.3  sigma non-opioid intracellular receptor 1 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      JAENSK010000087
      UniProtKB/Swiss-Prot
      Q5ZL84
      Related
      ENSGALP00010014359.1, ENSGALT00010025392.1
      Conserved Domains (1) summary
      pfam04622
      Location:24 → 212
      ERG2_Sigma1R; ERG2 and Sigma1 receptor like protein

    2. NM_001318004.2 → NP_001304933.1  sigma non-opioid intracellular receptor 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains a distinct terminal exon compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus.
      Source sequence(s)
      JAENSK010000087
      UniProtKB/TrEMBL
      A0A1D5P285
      Conserved Domains (1) summary
      pfam04622
      Location:24 → 148
      ERG2_Sigma1R; ERG2 and Sigma1 receptor like protein

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      8478240..8481305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040655310.2 → XP_040511244.1  sigma non-opioid intracellular receptor 1 isoform X1

    2. XM_046905169.1 → XP_046761125.1  sigma non-opioid intracellular receptor 1 isoform X2

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      8478240..8481305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046934604.1 → XP_046790560.1  sigma non-opioid intracellular receptor 1 isoform X1

    2. XM_046934605.1 → XP_046790561.1  sigma non-opioid intracellular receptor 1 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZL84.1 GenPept UniProtKB/Swiss-Prot:Q5ZL84

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.