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    SC5D sterol-C5-desaturase [ Gallus gallus (chicken) ]

    Gene ID: 100857756, updated on 8-Mar-2024

    Summary

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    Symbol
    SC5Dprovided by CGNC
    Full Name
    sterol-C5-desaturaseprovided by CGNC
    Primary source
    CGNC:65299
    See related
    Ensembl:ENSGALG00010025799
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SC5DL
    Orthologs
    human mouse all
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    Genomic context

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    See SC5D in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (3585596..3590778, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (3544954..3550162, complement)

    Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107055055 Neighboring gene microRNA mir-125b-1 Neighboring gene sortilin related receptor 1 Neighboring gene tectorin alpha Neighboring gene tubulin folding cofactor E like Neighboring gene glutamate ionotropic receptor kainate type subunit 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cholesterol biosynthetic process via lathosterol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lathosterol oxidase
    Names
    sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3585596..3590778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015298176.4 → XP_015153662.1  lathosterol oxidase

      UniProtKB/TrEMBL
      A0A8V1A482
      Related
      ENSGALP00010038849.1, ENSGALT00010062904.1
      Conserved Domains (1) summary
      COG3000
      Location:20 → 257
      ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3544954..3550162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040690582.2 → XP_040546516.1  lathosterol oxidase

      UniProtKB/TrEMBL
      A0A8V1A482
      Conserved Domains (1) summary
      COG3000
      Location:20 → 257
      ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    Nucleotide Protein Strain
    Heading Accession and Version

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