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    clptm1 cleft lip and palate associated transmembrane protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100491880, updated on 8-Mar-2024

    Summary

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    Official Symbol
    clptm1provided by Xenbase
    Official Full Name
    cleft lip and palate associated transmembrane protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-949804
    See related
    Ensembl:ENSXETG00000033140
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (71095336..71119033)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (49982505..49999118)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 61 Neighboring gene uncharacterized LOC116406527 Neighboring gene v-rel avian reticuloendotheliosis viral oncogene homolog B Neighboring gene probable zinc transporter protein DDB_G0282067 Neighboring gene protein phosphatase 1 regulatory subunit 37

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cleft lip and palate transmembrane protein 1
    Names
    cleft lip and palate transmembrane protein 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      71095336..71119033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002932640.5 → XP_002932686.3  cleft lip and palate transmembrane protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q2F9
      Related
      ENSXETP00000063459.3, ENSXETT00000060566.3
      Conserved Domains (1) summary
      pfam05602
      Location:64 → 504
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)

    2. XM_004916966.4 → XP_004917023.1  cleft lip and palate transmembrane protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J0R6V1
      Conserved Domains (1) summary
      pfam05602
      Location:1 → 394
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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