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    ticrr TOPBP1-interacting checkpoint and replication regulator [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100489448, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ticrrprovided by Xenbase
    Official Full Name
    TOPBP1-interacting checkpoint and replication regulatorprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-963895
    See related
    Ensembl:ENSXETG00000017769
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    treslin
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (109575987..109607902)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (99590999..99619479)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116409778 Neighboring gene uncharacterized LOC116409779 Neighboring gene Rh family C glycoprotein Neighboring gene retinaldehyde binding protein 1 Neighboring gene abhydrolase domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mitotic DNA replication checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to ionizing radiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    treslin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      109575987..109607902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031899228.1 → XP_031755088.1  treslin

      UniProtKB/TrEMBL
      F6T9R4
      Related
      ENSXETP00000038544.5, ENSXETT00000038544.5
      Conserved Domains (2) summary
      PHA03247
      Location:1011 → 1389
      PHA03247; large tegument protein UL36; Provisional
      pfam15292
      Location:207 → 983
      Treslin_N; Treslin N-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

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