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    synm synemin [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100486590, updated on 8-Mar-2024

    Summary

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    Official Symbol
    synmprovided by Xenbase
    Official Full Name
    syneminprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-992892
    See related
    Ensembl:ENSXETG00000039139
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    dmn; syn; desmuslin
    Orthologs
    human mouse all
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    Genomic context

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    See synm in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (115089550..115105146)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (105053178..105068534)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene insulin like growth factor 1 receptor Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene leucine rich repeat containing 28 Neighboring gene uncharacterized LOC101730683

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of muscle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within intermediate filament cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    synemin
    Names
    synemin, intermediate filament protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      115089550..115105146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002939269.5 → XP_002939315.3  synemin

      UniProtKB/TrEMBL
      A0A6I8SEV3
      Related
      ENSXETP00000093322.2, ENSXETT00000073993.2
      Conserved Domains (1) summary
      pfam00038
      Location:10 → 316
      Filament; Intermediate filament protein
    Nucleotide Protein Strain
    Heading Accession and Version

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