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    ccdc51 coiled-coil domain containing 51 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145697, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ccdc51provided by Xenbase
    Official Full Name
    coiled-coil domain containing 51provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5723238
    See related
    Ensembl:ENSXETG00000044242 Ensembl:ENSXETG00000047356
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (139422741..139452919, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (128858731..128889451, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 12 (provisional) Neighboring gene translation machinery associated 7 homolog Neighboring gene deoxyribonuclease gamma Neighboring gene tubulin monoglycylase TTLL3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    mitochondrial potassium channel

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127071.1 → NP_001120543.1  mitochondrial potassium channel

      See identical proteins and their annotated locations for NP_001120543.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161470
      UniProtKB/TrEMBL
      B1WAR3, F7DNE0
      Conserved Domains (1) summary
      TIGR02169
      Location:103 → 380
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      139422741..139452919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012960634.3 → XP_012816088.1  mitochondrial potassium channel isoform X3

      See identical proteins and their annotated locations for XP_012816088.1

      UniProtKB/TrEMBL
      B1WAR3, F7DNE0
      Conserved Domains (1) summary
      TIGR02169
      Location:103 → 380
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. XM_012960633.3 → XP_012816087.1  mitochondrial potassium channel isoform X3

      See identical proteins and their annotated locations for XP_012816087.1

      UniProtKB/TrEMBL
      B1WAR3, F7DNE0
      Conserved Domains (1) summary
      TIGR02169
      Location:103 → 380
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    3. XM_012960632.3 → XP_012816086.1  mitochondrial potassium channel isoform X2

      See identical proteins and their annotated locations for XP_012816086.1

      UniProtKB/TrEMBL
      A0A803JK14
      Conserved Domains (1) summary
      pfam05485
      Location:3 → 95
      THAP; THAP domain

    4. XM_012960629.3 → XP_012816083.1  mitochondrial potassium channel isoform X2

      See identical proteins and their annotated locations for XP_012816083.1

      UniProtKB/TrEMBL
      A0A803JK14
      Related
      ENSXETP00000108245.1, ENSXETT00000122081.1
      Conserved Domains (1) summary
      pfam05485
      Location:3 → 95
      THAP; THAP domain

    5. XM_012960630.3 → XP_012816084.1  mitochondrial potassium channel isoform X1

      See identical proteins and their annotated locations for XP_012816084.1

      UniProtKB/TrEMBL
      A0A803JG92
      Related
      ENSXETP00000106933.1, ENSXETT00000117942.1
      Conserved Domains (1) summary
      pfam05485
      Location:5 → 94
      THAP; THAP domain

    6. XM_012960631.3 → XP_012816085.1  mitochondrial potassium channel isoform X1

      See identical proteins and their annotated locations for XP_012816085.1

      UniProtKB/TrEMBL
      A0A803JG92
      Related
      ENSXETP00000110103.1, ENSXETT00000116153.1
      Conserved Domains (1) summary
      pfam05485
      Location:5 → 94
      THAP; THAP domain

    7. XM_031899861.1 → XP_031755721.1  mitochondrial potassium channel isoform X1

      UniProtKB/TrEMBL
      A0A803JG92
      Related
      ENSXETP00000115629.1, ENSXETT00000109967.1
      Conserved Domains (1) summary
      pfam05485
      Location:5 → 94
      THAP; THAP domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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