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    vstm4b V-set and transmembrane domain containing 4b [ Danio rerio (zebrafish) ]

    Gene ID: 100142652, updated on 11-Apr-2024

    Summary

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    Official Symbol
    vstm4bprovided by ZNC
    Official Full Name
    V-set and transmembrane domain containing 4bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080303-17
    See related
    Ensembl:ENSDARG00000053186 AllianceGenome:ZFIN:ZDB-GENE-080303-17
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    sc:d805
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; and somite. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (2399045..2417424)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (2367285..2383959)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886442 Neighboring gene uncharacterized LOC110440137 Neighboring gene leucine rich repeat containing 18b Neighboring gene si:dkey-191m6.4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling. Martin S, et al. Mol Cell Proteomics, 2010 Dec. PMID 20802085, Free PMC Article
    2. The impact of gene expression regulation on evolution of extracellular signaling pathways. Charoensawan V, et al. Mol Cell Proteomics, 2010 Dec. PMID 20935258, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    V-set and transmembrane domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      2399045..2417424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480203.1 → XP_021335878.1  V-set and transmembrane domain-containing protein 4

      UniProtKB/TrEMBL
      A0A8M9Q8Q6
      Related
      ENSDARP00000069664.6, ENSDART00000075179.6
      Conserved Domains (1) summary
      pfam07686
      Location:28 → 152
      V-set; Immunoglobulin V-set domain
    Nucleotide Protein
    Heading Accession and Version

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