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    rufy1 RUN and FYVE domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100125790, updated on 8-Mar-2024

    Summary

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    Official Symbol
    rufy1provided by Xenbase
    Official Full Name
    RUN and FYVE domain containing 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-990606
    See related
    Ensembl:ENSXETG00000018316
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    rabip4; zfyve12
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (31706235..31740416)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (22488199..22517135)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene deoxycytidine kinase, gene 2 Neighboring gene heterogeneous nuclear ribonucleoprotein H1 Neighboring gene heparin-binding EGF-like growth factor Neighboring gene prefoldin subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RUN and FYVE domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      31706235..31740416
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004912817.4 → XP_004912874.2  RUN and FYVE domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8S3A4, F7AW47
      Conserved Domains (3) summary
      TIGR02168
      Location:303 → 554
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd15758
      Location:525 → 595
      FYVE_RUFY1; FYVE domain found in RUN and FYVE domain-containing protein 1 (RUFY1) and similar proteins
      pfam02759
      Location:38 → 159
      RUN; RUN domain

    2. XM_004912816.4 → XP_004912873.2  RUN and FYVE domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8RGG8, A0A6I8S3A4
      Related
      ENSXETP00000084025.2, ENSXETT00000077719.2
      Conserved Domains (3) summary
      TIGR02168
      Location:310 → 561
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd15758
      Location:532 → 602
      FYVE_RUFY1; FYVE domain found in RUN and FYVE domain-containing protein 1 (RUFY1) and similar proteins
      pfam02759
      Location:45 → 166
      RUN; RUN domain

    3. XM_002937729.5 → XP_002937775.3  RUN and FYVE domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8S3A4, F7AW47
      Related
      ENSXETP00000039680.5, ENSXETT00000039680.5
      Conserved Domains (3) summary
      TIGR02168
      Location:303 → 554
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd15758
      Location:525 → 595
      FYVE_RUFY1; FYVE domain found in RUN and FYVE domain-containing protein 1 (RUFY1) and similar proteins
      pfam02759
      Location:38 → 159
      RUN; RUN domain
    Nucleotide Protein Strain
    Heading Accession and Version

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