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    esrrg estrogen related receptor gamma [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100101684, updated on 8-Mar-2024

    Summary

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    Official Symbol
    esrrgprovided by Xenbase
    Official Full Name
    estrogen related receptor gammaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-486172
    See related
    Ensembl:ENSXETG00000020932
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    err3; nr3b3
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (12441719..12602745)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (8686919..8843668)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene G-patch domain containing 2 Neighboring gene 40S ribosomal protein S13-like Neighboring gene uncharacterized LOC116410918 Neighboring gene usherin Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (guanine) methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables rRNA (uridine-2'-O-)-methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables steroid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rRNA methylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    estrogen-related receptor gamma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100210.1 → NP_001093680.1  estrogen-related receptor gamma

      See identical proteins and their annotated locations for NP_001093680.1

      Status: PROVISIONAL

      Source sequence(s)
      BC136151
      UniProtKB/TrEMBL
      A4IIT9, F6ZZW0
      Conserved Domains (2) summary
      cd06946
      Location:214 → 433
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:101 → 195
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      12441719..12602745
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012962574.3 → XP_012818028.1  estrogen-related receptor gamma isoform X1

      UniProtKB/TrEMBL
      A0A803JMQ7, A0A8J0SN58
      Related
      ENSXETP00000109218.1, ENSXETT00000123862.1
      Conserved Domains (2) summary
      cd06946
      Location:263 → 482
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:150 → 244
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    2. XM_012962576.3 → XP_012818030.1  estrogen-related receptor gamma isoform X3

      UniProtKB/TrEMBL
      A0A803JMQ7, A0A8J0SDF0
      Conserved Domains (2) summary
      cd06946
      Location:243 → 462
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:130 → 224
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    3. XM_031901422.1 → XP_031757282.1  estrogen-related receptor gamma isoform X5

      UniProtKB/TrEMBL
      A0A6I8Q6E8, F6ZZV0, F6ZZW0
      Related
      ENSXETP00000065071.2, ENSXETT00000072019.2
      Conserved Domains (2) summary
      cd06946
      Location:233 → 452
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:120 → 214
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    4. XM_012962580.3 → XP_012818034.1  estrogen-related receptor gamma isoform X6

      See identical proteins and their annotated locations for XP_012818034.1

      UniProtKB/TrEMBL
      A4IIT9, F6ZZW0
      Conserved Domains (2) summary
      cd06946
      Location:214 → 433
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:101 → 195
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    5. XM_012962579.3 → XP_012818033.1  estrogen-related receptor gamma isoform X5

      See identical proteins and their annotated locations for XP_012818033.1

      UniProtKB/TrEMBL
      A0A6I8Q6E8, F6ZZV0, F6ZZW0
      Related
      ENSXETP00000045241.5, ENSXETT00000045241.5
      Conserved Domains (2) summary
      cd06946
      Location:233 → 452
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:120 → 214
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    6. XM_012962577.3 → XP_012818031.1  estrogen-related receptor gamma isoform X4

      UniProtKB/TrEMBL
      A0A8J0SN23, F6ZZW0
      Conserved Domains (2) summary
      cd06946
      Location:237 → 456
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:124 → 218
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    7. XM_012962578.2 → XP_012818032.1  estrogen-related receptor gamma isoform X5

      See identical proteins and their annotated locations for XP_012818032.1

      UniProtKB/TrEMBL
      A0A6I8Q6E8, F6ZZV0, F6ZZW0
      Related
      ENSXETP00000045243.4, ENSXETT00000045243.5
      Conserved Domains (2) summary
      cd06946
      Location:233 → 452
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:120 → 214
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

    8. XM_012962575.3 → XP_012818029.2  estrogen-related receptor gamma isoform X2

      UniProtKB/TrEMBL
      A0A6I8R2P0, A0A803KFQ3
      Related
      ENSXETP00000076241.2, ENSXETT00000075331.2
      Conserved Domains (2) summary
      cd06946
      Location:254 → 473
      NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
      cd07170
      Location:141 → 235
      NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers
    Nucleotide Protein Strain
    Heading Accession and Version

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