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    fubp3 far upstream element binding protein 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100038226, updated on 8-Mar-2024

    Summary

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    Official Symbol
    fubp3provided by Xenbase
    Official Full Name
    far upstream element binding protein 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-492617
    See related
    Ensembl:ENSXETG00000001344
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    fbp3
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (12958316..13002516, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (5626386..5668302)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene exosome component 2 Neighboring gene PR domain containing 12 Neighboring gene argininosuccinate synthase 1 Neighboring gene hemicentin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of protein kinase C signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in synapse maturation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in neuronal cell body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    far upstream element-binding protein 3
    Names
    far upstream element (FUSE) binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097365.1 → NP_001090834.1  far upstream element-binding protein 3

      See identical proteins and their annotated locations for NP_001090834.1

      Status: PROVISIONAL

      Source sequence(s)
      BC135376
      UniProtKB/TrEMBL
      A4IH51, F6RN09
      Related
      ENSXETP00000002853.3, ENSXETT00000002853.5
      Conserved Domains (1) summary
      pfam00013
      Location:80 → 142
      KH_1; KH domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      12958316..13002516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012967837.3 → XP_012823291.1  far upstream element-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PJF6, F6RN09
      Related
      ENSXETP00000056010.4, ENSXETT00000056010.4
      Conserved Domains (2) summary
      cd00105
      Location:80 → 142
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam00013
      Location:358 → 424
      KH_1; KH domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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