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    nr2f2 nuclear receptor subfamily 2 group F member 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100038039, updated on 8-Mar-2024

    Summary

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    Official Symbol
    nr2f2provided by Xenbase
    Official Full Name
    nuclear receptor subfamily 2 group F member 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-482566
    See related
    Ensembl:ENSXETG00000022346
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    arp1; coup1; svp40; couptfb; tfcoup2; couptfii; xcouptfb; coup-tfii; xCOUP-TFB
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (113984829..113997999)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (103946137..103959222)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene repulsive guidance molecule BMP co-receptor a Neighboring gene multiple C2 domains, transmembrane 2 Neighboring gene uncharacterized LOC105946774 Neighboring gene uncharacterized LOC116409489 Neighboring gene arrestin domain containing 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC52954

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    COUP transcription factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114231.1 → NP_001107703.1  COUP transcription factor 2

      See identical proteins and their annotated locations for NP_001107703.1

      Status: PROVISIONAL

      Source sequence(s)
      BC157199
      UniProtKB/TrEMBL
      A0A6I8S6F4, A0A803KGK3
      Conserved Domains (3) summary
      cd06948
      Location:171 → 406
      NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
      cd06958
      Location:73 → 145
      NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
      NF038329
      Location:9 → 54
      gly_rich_SclB; LPXTG-anchored collagen-like adhesin Scl2/SclB

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      113984829..113997999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012958362.2 → XP_012813816.1  COUP transcription factor 2 isoform X2

      UniProtKB/TrEMBL
      A0A6I8REM5, A0A803JT44
      Related
      ENSXETP00000080178.1, ENSXETT00000083610.2
      Conserved Domains (1) summary
      cd06948
      Location:44 → 279
      NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

    2. XM_012958361.3 → XP_012813815.1  COUP transcription factor 2 isoform X1

      UniProtKB/TrEMBL
      A0A6I8S6F4, A9ULC1, F7C0J7
      Related
      ENSXETP00000048333.3, ENSXETT00000048333.4
      Conserved Domains (2) summary
      cd06948
      Location:178 → 413
      NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
      cd06958
      Location:73 → 143
      NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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