nptxrb neuronal pentraxin receptor b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nptxrbprovided by ZNC
Official Full Name: neuronal pentraxin receptor bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050208-595
See related: Ensembl:ENSDARG00000053375 AllianceGenome:ZFIN:ZDB-GENE-050208-595
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: nptxr; zgc:158178; si:dkeyp-20e4.1
Summary: Orthologous to human NPTXR (neuronal pentraxin receptor). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 22

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (25024235..25033038, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (24996611..25005414, complement)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: neuronal pentraxin receptor b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001044314.1 → NP_001037779.1 neuronal pentraxin receptor b

See identical proteins and their annotated locations for NP_001037779.1

Status: PROVISIONAL

Source sequence(s)

BC131861

UniProtKB/TrEMBL

A2RRU9

Related

ENSDARP00000107185.2, ENSDART00000124220.3

Conserved Domains (2) summary

pfam15188
Location:210 → 285

CCDC-167; Coiled-coil domain-containing protein 167

cl22861
Location:319 → 514

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...