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    Rnf123 ring finger protein 123 [ Mus musculus (house mouse) ]

    Gene ID: 84585, updated on 26-Jun-2015
    Official Symbol
    Rnf123provided by MGI
    Official Full Name
    ring finger protein 123provided by MGI
    Primary source
    MGI:MGI:2148796
    See related
    Ensembl:ENSMUSG00000041528; Vega:OTTMUSG00000033727
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kpc1; BC003945
    Orthologs
    See Rnf123 in Epigenomics, MapViewer
    Location:
    9; 9 F2
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 9 NC_000075.6 (108051672..108079773, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (107954171..107980134, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930535L15 gene Neighboring gene cadherin-related family member 4 Neighboring gene inositol hexaphosphate kinase 1 Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene adhesion molecule with Ig like domain 3 Neighboring gene microRNA 7088 Neighboring gene macrophage stimulating 1 (hepatocyte growth factor-like) Neighboring gene acylpeptide hydrolase

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    coenzyme F420-0 gamma-glutamyl ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    coenzyme F420-2 alpha-glutamyl ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    protein-glutamic acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein-glycine ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein-glycine ligase activity, elongating IEA
    Inferred from Electronic Annotation
    more info
     
    protein-glycine ligase activity, initiating IEA
    Inferred from Electronic Annotation
    more info
     
    ribosomal S6-glutamic acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    tubulin-glutamic acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    tubulin-glycine ligase activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    E3 ubiquitin-protein ligase RNF123
    Names
    E3 ubiquitin-protein ligase RNF123
    kip1 ubiquitination-promoting complex protein 1
    ubiquitin ligase

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_032543.2NP_115932.1  E3 ubiquitin-protein ligase RNF123

      See identical proteins and their annotated locations for NP_115932.1

      Status: VALIDATED

      Source sequence(s)
      AC137678, AY744153, BC057082, BY286344
      Consensus CDS
      CCDS52922.1
      UniProtKB/Swiss-Prot
      Q5XPI3
      Related
      ENSMUSP00000136953, ENSMUST00000178267
      Conserved Domains (2) summary
      cd00162
      Location:12541295
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably ...
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p3 C57BL/6J

      Range
      108051672..108079773
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511879.2XP_006511942.1  

      See identical proteins and their annotated locations for XP_006511942.1

      UniProtKB/Swiss-Prot
      Q5XPI3
      Conserved Domains (2) summary
      cd00162
      Location:12601301
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably ...
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
    2. XM_006511878.1XP_006511941.1  

      See identical proteins and their annotated locations for XP_006511941.1

      UniProtKB/Swiss-Prot
      Q5XPI3
      Conserved Domains (2) summary
      cd00162
      Location:12601301
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably ...
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
    3. XM_006511877.2XP_006511940.1  

      See identical proteins and their annotated locations for XP_006511940.1

      UniProtKB/Swiss-Prot
      Q5XPI3
      Conserved Domains (2) summary
      cd00162
      Location:12601301
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably ...
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
    4. XM_006511880.2XP_006511943.1  

      See identical proteins and their annotated locations for XP_006511943.1

      UniProtKB/Swiss-Prot
      Q5XPI3
      Related
      ENSMUSP00000125745, OTTMUSP00000045842, ENSMUST00000162355, OTTMUST00000084954
      Conserved Domains (2) summary
      cd00162
      Location:12601301
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably ...
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
    5. XM_006511882.2XP_006511945.1  

      See identical proteins and their annotated locations for XP_006511945.1

      UniProtKB/Swiss-Prot
      Q5XPI3
      Conserved Domains (2) summary
      cd00162
      Location:12541295
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably ...
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
    6. XM_011242923.1XP_011241225.1  

      See identical proteins and their annotated locations for XP_011241225.1

      Conserved Domains (2) summary
      cd00162
      Location:12601301
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably ...
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
    7. XM_006511881.2XP_006511944.1  

      Conserved Domains (2) summary
      cd00162
      Location:12561297
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably ...
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
    8. XM_006511883.2XP_006511946.1  

      Conserved Domains (1) summary
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
    9. XM_006511885.2XP_006511948.1  

      Conserved Domains (1) summary
      cd12882
      Location:123250
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123

    RNA

    1. XR_379775.2 RNA Sequence

    Alternate Mm_Celera

    Genomic

    1. AC_000031.1 Alternate Mm_Celera

      Range
      107661522..107689144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)