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    AT1G17160 pfkB-like carbohydrate kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838287, updated on 8-Jan-2015
    Gene symbol
    AT1G17160
    Gene description
    pfkB-like carbohydrate kinase family protein
    Primary source
    TAIR:AT1G17160
    Locus tag
    AT1G17160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D23.14; F20D23_14
    See AT1G17160 in MapViewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (5867635..5869356)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene VQ motif-containing protein Neighboring gene pectin lyase-like protein Neighboring gene glutathione S-transferase TAU 24 Neighboring gene glutathione S-transferase TAU 25

    • Pentose phosphate pathway, organism-specific biosystem (from KEGG)
      Pentose phosphate pathway, organism-specific biosystemThe pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathwa...
    • Pentose phosphate pathway, conserved biosystem (from KEGG)
      Pentose phosphate pathway, conserved biosystemThe pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathwa...

    Homology

    • Homologs of the AT1G17160 gene: The AT1G17160 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, S.pombe, M.oryzae, N.crassa, rice, and frog.
    NM_001084082.2
    NM_101577.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    ribokinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    D-ribose metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    chloroplast IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm ISM
    Inferred from Sequence Model
    more info
     
    Names
    pfkB-like carbohydrate kinase family protein
    NP_001077551.1
    • pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 20525 Blast hits to 20525 proteins in 2560 species: Archae - 370; Bacteria - 15982; Metazoa - 398; Fungi - 241; Plants - 483; Viruses - 0; Other Eukaryotes - 3051 (source: NCBI BLink).
    NP_173159.1
    • pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, D-ribose catabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 24314 Blast hits to 24305 proteins in 2661 species: Archae - 422; Bacteria - 18834; Metazoa - 425; Fungi - 293; Plants - 520; Viruses - 0; Other Eukaryotes - 3820 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5867635..5869356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101577.4NP_173159.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173159.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1A6H3
      Conserved Domains (1) summary
      cd01174
      Location:70367
      ribokinase; Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides ...
    2. NM_001084082.2NP_001077551.1  pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077551.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQX7
      Conserved Domains (1) summary
      cd01174
      Location:70348
      ribokinase; Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides ...