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    AT4G12590 hypothetical protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826872, updated on 27-Jun-2015
    Gene symbol
    AT4G12590
    Gene description
    hypothetical protein
    Primary source
    TAIR:AT4G12590
    Locus tag
    AT4G12590
    Gene type
    protein coding
    RNA name
    uncharacterized protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1P17.180; T1P17_180
    See AT4G12590 in MapViewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (7451004..7453088, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase UPL5 Neighboring gene hypothetical protein Neighboring gene ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene transcription initiation factor IIF subunit alpha

    Homology

    NM_117329.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    Golgi vesicle transport RCA
    inferred from Reviewed Computational Analysis
    more info
    PubMed 
    cell growth RCA
    inferred from Reviewed Computational Analysis
    more info
    PubMed 
    cell morphogenesis RCA
    inferred from Reviewed Computational Analysis
    more info
    PubMed 
    Component Evidence Code Pubs
    cell RCA
    inferred from Reviewed Computational Analysis
    more info
    PubMed 
    endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Names
    hypothetical protein
    NP_192996.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF106, transmembrane (InterPro:IPR002809), Uncharacterised conserved protein UCP010045, transmembrane eukaryotic (InterPro:IPR008568); Has 409 Blast hits to 409 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 136; Plants - 53; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7451004..7453088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117329.2NP_192996.1  uncharacterized protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192996.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SU27
      Conserved Domains (1) summary
      pfam01956
      Location:4192
      DUF106; Integral membrane protein DUF106