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    PAT2 AP3-complex subunit beta-A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824714, updated on 7-Jun-2015
    Gene symbol
    PAT2
    Gene description
    AP3-complex subunit beta-A
    Primary source
    TAIR:AT3G55480
    Locus tag
    AT3G55480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    protein affected trafficking 2
    See PAT2 in MapViewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (20566248..20571248, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene PBS1-like 1 kinase Neighboring gene SC35-like splicing factor 30 Neighboring gene calcium-dependent lipid-binding domain-containing protein Neighboring gene ncRNA Neighboring gene GINS complex protein

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description
    NM_115406.5
    NM_202714.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    Golgi to vacuole transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    lytic vacuole organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of intracellular pH IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    cell IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cytoplasmic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nucleus ISM
    Inferred from Sequence Model
    more info
     
    Names
    AP3-complex subunit beta-A
    NP_567022.1
    • protein affected trafficking 2 (PAT2); FUNCTIONS IN: binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G11380.1); Has 2700 Blast hits to 1765 proteins in 249 species: Archae - 0; Bacteria - 810; Metazoa - 816; Fungi - 546; Plants - 173; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
    NP_974443.4
    • protein affected trafficking 2 (PAT2); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, endocytosis, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-3, beta subunit (InterPro:IPR017108), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 2490 Blast hits to 1771 proteins in 223 species: Archae - 0; Bacteria - 20; Metazoa - 1008; Fungi - 721; Plants - 224; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20566248..20571248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202714.4NP_974443.4  AP3-complex subunit beta-A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974443.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IWW1
      Conserved Domains (2) summary
      pfam01602
      Location:47639
      Adaptin_N; Adaptin N terminal region
      pfam14796
      Location:804942
      AP3B1_C; Clathrin-adaptor complex-3 beta-1 subunit C-terminal
    2. NM_115406.5NP_567022.1  AP3-complex subunit beta-A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567022.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M2T1
      Conserved Domains (2) summary
      pfam01602
      Location:9511
      Adaptin_N; Adaptin N terminal region
      pfam14796
      Location:676814
      AP3B1_C; Clathrin-adaptor complex-3 beta-1 subunit C-terminal