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    Rpf2 ribosome production factor 2 homolog (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 67239, updated on 26-Jun-2015
    Official Symbol
    Rpf2provided by MGI
    Official Full Name
    ribosome production factor 2 homolog (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1914489
    See related
    Ensembl:ENSMUSG00000038510; Vega:OTTMUSG00000043583
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bxdc1; AU040229; AU043242; 2810470K21Rik
    Orthologs
    See Rpf2 in Epigenomics, MapViewer
    Location:
    10; 10 B1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 10 NC_000076.6 (40223246..40247039, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (39943052..39966845, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 10 Neighboring gene predicted gene, 31930 Neighboring gene predicted gene, 31992 Neighboring gene predicted gene, 32056 Neighboring gene general transcription factor IIIC, polypeptide 6, alpha Neighboring gene U3A small nuclear RNA

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    poly(A) RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    ribosomal large subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    ribosome production factor 2 homolog
    Names
    ribosome production factor 2 homolog
    brix domain containing 1
    brix domain-containing protein 1
    ribosome biogenesis protein RPF2 homolog

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001042556.1NP_001036021.1  ribosome production factor 2 homolog isoform 2

      See identical proteins and their annotated locations for NP_001036021.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate splice site in the 5' region and initiates translation at a downstream start codon, compared to variant 1. The resulting isoform (2) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AB041810, AK051135
      Consensus CDS
      CCDS35885.1
      UniProtKB/TrEMBL
      G3X926
      UniProtKB/Swiss-Prot
      Q9JJ80
      Related
      ENSMUSP00000035456, OTTMUSP00000063868, ENSMUST00000045114, OTTMUST00000114443
      Conserved Domains (1) summary
      cl00935
      Location:1253
      Brix; Brix domain
    2. NM_023323.3NP_075812.3  ribosome production factor 2 homolog isoform 1

      See identical proteins and their annotated locations for NP_075812.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK012641, AK051135, BQ828311
      Consensus CDS
      CCDS59543.1
      UniProtKB/Swiss-Prot
      Q9JJ80
      Related
      ENSMUSP00000138581, OTTMUSP00000063869, ENSMUST00000183309, OTTMUST00000114444
      Conserved Domains (1) summary
      cl00935
      Location:6286
      Brix; Brix domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p3 C57BL/6J

      Range
      40223246..40247039
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006512828.2XP_006512891.1  

      Conserved Domains (1) summary
      cl00935
      Location:5196
      Brix; Brix domain

    Alternate Mm_Celera

    Genomic

    1. AC_000032.1 Alternate Mm_Celera

      Range
      41110053..41133833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)